Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq122 105 7e-18 seq83 105 7e-18 >seq122 Length=4874392 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||||||| || || || || ||||| || ||||| || || || || || || || | Sbjct 3215637 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 3215696 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATT 66058 ||||| || ||||||||||||||||| || ||||| || || |||||||| || || | Sbjct 3215697 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 3215756 Query 66059 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || |||||||| || | ||| || || || ||||| ||||||||||| || Sbjct 3215757 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 3215816 Query 66119 TTCAAC 66124 || || Sbjct 3215817 CTCCAC 3215822 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| || || || ||| ||| | ||| | |||| | || ||||||| | Sbjct 3181622 CCGTGAGTCAGGTGACCACCGTGTGCCAGGTTCATCCCCAGAATGGTGTCGCCCGGCTGC 3181681 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || ||| || || ||| || || |||||||| || || || ||||| || Sbjct 3181682 AGCAGCGCGGTGTAGACCGCGAAGTTAGCCTGGGAACCGGAGTGCGGCTGCACGTTGGCA 3181741 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | || ||||| |||| ||||| ||||| ||||| | ||| | |||| | Sbjct 3181742 TAGTCAGCACCGAACAGCGCTTTGGCACGATCAATAGCCAGCTGCTCAACGATATCGACG 3181801 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | ||||||| || || || || ||||||||||| || ||||| || |||||||| | Sbjct 3181802 TACTCGCAGCCACCGTAGTAGCGCTTGCCCGGATAGCCTTCAGCGTATTTGTTGGTCAGC 3181861 Query 7178 ATAGAACCCTGTGCTTTCATAA--CATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 || ||||| || | ||| | | | | ||| |||||||| || ||||||| Sbjct 3181862 TGCGATCCCTGAGCCTGCATCACGCGTGGGCTG--GTGTAGTTTTCTGAAGCAATCA 3181916 >seq83 Length=912621 Score = 105 bits (116), Expect = 7e-18 Identities = 212/303 (70%), Gaps = 16/303 (5%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||||||||| |||||||| ||| | |||| | |||| | || || || | Sbjct 880083 CCGTGAGTGAGGTGGCCGCCATGAGCCAGGTTCATACCCAGAATAGTGTCGCCTGGGGTT 880142 Query 6998 AGGAGTGCTTGGTAAAC-TGCC-TGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTG 7055 | || || ||||||| ||| ||| ||||| || || || ||||| |||||||| | Sbjct 880143 AACAGGGC--GGTAAACACGCCGAAGTTAGCTTGAGAGCCTGAGTGAGGCTGAACGTTAG 880200 Query 7056 CGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAG--GTTCT-CGATTTCA 7111 || ||| ||| || || | |||| ||||| ||||| ||||| ||||| |||| ||| Sbjct 880201 CGTAATCTGC-ACCGAATAACGCTTTTGCACGGTCAATCGCCAGTTGTTCTACGATATCA 880259 Query 7112 TCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTG 7171 || | | |||| || ||||| || || |||||||| || || || || ||||| ||| Sbjct 880260 ACG---TATTCGCAACCACCATAGTAACGCTTGCCCGGGTAACCTTCGGCGTACTTATTG 880316 Query 7172 GTAAAAATAGAACCCTGTGCTTTCATAACA--TCGTCTGACACATAGTTTTCGGACGCAA 7229 || | || || || |||| ||||||| | | ||| |||||||| || |||| Sbjct 880317 GTCAGTTGTGATCCTTGCGCTTCCATAACACGTGGACTG--GTGTAGTTTTCTGAAGCAA 880374 Query 7230 TCA 7232 ||| Sbjct 880375 TCA 880377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555319722003480