Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq93 127 2e-24 >seq93 Length=974399 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || || || || || || || ||||||||||| |||| ||||||||| || || || Sbjct 914956 ATGTATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGA 915015 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || ||||| || || | || |||| |||||||||||| || | |||||||| |||| Sbjct 915016 AAGCCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACT-GAATCTTTCCACTAA 915074 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| || || ||||| ||| ||||||||| || ||||| | || ||||| | Sbjct 915075 GTTTTCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATG 915134 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTG 13631 ||| || | | || || |||| |||||||| Sbjct 915135 TTTCTCATCCTTTGTCAGCTTTGCCCAATCTG 915166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430949502978726