Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq83 203 5e-47 seq122 172 8e-38 >seq83 Length=912621 Score = 203 bits (224), Expect = 5e-47 Identities = 318/455 (70%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 43573 TGGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGAT 43632 |||||| || |||| ||||| | || | ||| |||||| | | | || |||||||| Sbjct 580234 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 580175 Query 43633 TTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAG 43692 ||| | ||||| || || || || | || || |||| || || ||| |||||||| Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 43693 AACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACC 43752 || | | |||||| ||| | |||||||| || || | || || || || || || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 43753 GCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAAT 43812 |||||| || || || |||||| ||| || || |||||||| | ||| ||||||| || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 43813 AATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCC 43872 | ||| || ||| | ||||||||| || || | ||| ||||||||| ||| Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 43873 ACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGC 43932 | | ||||||||||| || ||||||| || || | |||||| | ||| | || || Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 579875 Query 43933 GTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGT 43992 ||| || || | ||||| | ||||| |||||||||||| || |||||||| Sbjct 579874 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 43993 CGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 ||| || || || ||||| | |||||||| |||| Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTA 579780 Score = 107 bits (118), Expect = 3e-18 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 40659 GCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGAATCAG---ATAC 40715 || ||||| | |||||| | ||||||||| | | || |||| || | || || | Sbjct 582381 GCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC--AGCA-GATTTAGCATATGC 582325 Query 40716 TGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTTG 40775 || || || ||||||| || ||| ||||| || || ||||| |||||||| || || Sbjct 582324 TGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTA 582265 Query 40776 CCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACGA 40835 |||||||| | ||||||| |||| | ||| | ||||||||||| || ||||||||| Sbjct 582264 CCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACGA 582205 Query 40836 ATCGCTTCCAAAGCGTTTACG 40856 || ||||| | || || ||| Sbjct 582204 ATGGCTTCGAGGGCATTGACG 582184 >seq122 Length=4874392 Score = 172 bits (190), Expect = 8e-38 Identities = 285/409 (70%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 43621 CAGCTTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTT 43680 ||||||||| | || | |||||||| | || || | || || |||| ||||| Sbjct 2806284 CAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCG 2806225 Query 43681 GTTGTTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGT 43740 |||||| ||||| || || | |||| ||||| |||||||||||||| ||| | || || Sbjct 2806224 GTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGT 2806165 Query 43741 AGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTT 43800 || || || ||||| || || ||||| ||||| || ||||| |||||||| | || Sbjct 2806164 CGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTT 2806105 Query 43801 CCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGC 43860 |||||||||| || |||||| ||||||| | || || | || || Sbjct 2806104 ATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGC 2806045 Query 43861 ACGAATAGCG-CCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTG 43919 ||| || ||| || |||| || |||||||| || || | || || | || || | Sbjct 2806044 ACGGAT-GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG 2805986 Query 43920 AACTTGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGC 43979 || | ||| ||||||||| ||| || |||||||| || ||| ||||| |||| Sbjct 2805985 CGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGC 2805926 Query 43980 TAAACTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 | |||||||| |||||||| || || || | | |||||||||||| || Sbjct 2805925 TGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 2805877 Score = 170 bits (188), Expect = 3e-37 Identities = 618/957 (65%), Gaps = 14/957 (1%) Strand=Plus/Minus Query 37822 TCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAGA 37881 ||||| ||| ||||||| || | | || ||| || || || || || |||||||| Sbjct 3820877 TCCAGCAGCGCCCAGAAGCGTGTCTCATCGCCACCCGCTTCCAGGGCAATGCGCGGCAGG 3820818 Query 37882 TTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCCATTTTCGTCT 37941 || || ||| || || | |||||| || || ||||| | | | || || || | Sbjct 3820817 TTGAGGCTAATCACGCCAATATTATTGCGCCCCTCGTGGATCTGTTCCCCGTTCTCCTGA 3820758 Query 37942 TCCCAACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCA 38001 | | ||| | | ||| |||||||| ||||| || ||||| || || | Sbjct 3820757 TAC--ACGCCG-AGGAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAACCGGTGACCTGC 3820701 Query 38002 ACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCC 38061 || || | |||||| | || ||||| || ||||| || ||| ||||||||||| ||| Sbjct 3820700 ACCACCTGGTCATAATTGAGGATATCGGGGTACATGCGTTTACTGGCGCACTCCAGCGCC 3820641 Query 38062 AGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGTCTTTCAGAGCA 38121 || || |||||| ||| || || | ||| | ||| |||| | || Sbjct 3820640 AGCTGTTTGATATCGTAATTTGGCTCGCCGCGACGGTGGTTCAGCCCGGCTTTGATGGCG 3820581 Query 38122 AACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACT 38181 |||||||| || || ||||| | ||| | | ||| || || || || | || Sbjct 3820580 AACACCAGCTTGGGAAACACGGCAGTTTTGTGATTTTTACCCAGCCCGGCGATGCGGTTA 3820521 Query 38182 TTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAAT 38241 || ||||| | ||| ||||| ||| ||||||| || || || |||||||| Sbjct 3820520 CGCAGGATCGACTGCTGGATCAGGCGCGCTGCCCAGCTGGTGCCGAGGCCGAAGCCGAAG 3820461 Query 38242 GT-ACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAGTCC 38300 || ||| || || || || ||||| |||| ||| || || || ||||| || || || Sbjct 3820460 GTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTGACCTCATACTCCAGCGA 3820402 Query 38301 CTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTATTCTTTCGCATCTG 38359 ||| | || || || ||| |||| | || || || || ||| || || | Sbjct 3820401 CTGAAAGGCGTCGTAGCACT-CTTTTTCGGTGCGCGCGCGGGCATAGGCTTCGGCGTCGG 3820343 Query 38360 GAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGT--CATCTTAACATACGG 38417 ||| | ||| | ||| | | || ||| | | | |||| || |||| Sbjct 3820342 CAATCTGCCATTCGTCGGCGGTGGCGCGGTGTTTTGCCAGGCTGGCATCC--ACGAACGG 3820285 Query 38418 TGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTACTTG 38477 ||||||||||| |||||||| ||||| ||| |||| |||||||| || || || || || Sbjct 3820284 CGCCAGCACTTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTG 3820225 Query 38478 CGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGATCTG 38537 || || ||||| ||| ||||| | ||||| || || || || | |||||||| Sbjct 3820224 GGCGATGATCTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTC 3820165 Query 38538 TGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCAGTT 38597 || || ||||| ||| ||| | | |||||| | || |||| ||||||||| Sbjct 3820164 GGCGTTACCCATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTT 3820105 Query 38598 AAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCTTTTTCGTG 38657 |||||| ||||| || || || ||||| ||||| || |||| | | ||| || || Sbjct 3820104 AAACATCGGGAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCGCTCATG 3820045 Query 38658 TGCTTGCATAACTTCAACAGGAAGATAATGCT---TTGCAAAGTGCTTACTAACAATACC 38714 || | || ||| || || ||||| || |||| || || || || Sbjct 3820044 GGCGCTGACCACATCACGCGGCAGCATATGCTGACGGGCGTAGTGTTTGGCGACGATCCC 3819985 Query 38715 AGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCATTCTCATT 38771 || | ||||||||| ||||| ||||| || || || || || ||||| ||||| Sbjct 3819984 GGCCAGCAGATCGCGCTGAGTGGGGATCACCTTGCTATCCTTATTGGCATTTTCATT 3819928 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 40655 TTTGGCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGA--ATCAGA 40712 ||| || |||||| |||||| | ||| ||||| || |||| |||| | | || | Sbjct 2808436 TTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCA--CTGCGCAGCAGGTTCAGCATA 2808379 Query 40713 TACTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCG 40772 | ||| ||||| ||||||| || |||||| || || ||||| ||||| || || Sbjct 2808378 TGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCGATCAGCTTAATGATTTTGGCA 2808319 Query 40773 TTGCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAA 40832 ||||||||||| | | ||||| | || | ||| | ||| || ||||| || || || Sbjct 2808318 TTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAGCAGGCGAAGCTGACGTAAAAG 2808259 Query 40833 CGAATCGCTTCCAAAGCGTTTACG 40856 || |||||||||| ||||| ||| Sbjct 2808258 CGGATCGCTTCCAGCGCGTTGACG 2808235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746162380239120