Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq83 334 2e-87 seq505 269 7e-68 seq122 125 2e-24 seq746 100 7e-17 >seq83 Length=912621 Score = 334 bits (370), Expect = 2e-87 Identities = 597/865 (69%), Gaps = 16/865 (2%) Strand=Plus/Plus Query 33274 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 33333 ||||||||| |||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 826195 GTCCGGCGACGTCGACATCGCCCAGCCCACCGGTTTACGGGCGAACAGATCCAGCACCAC 826254 Query 33334 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 33393 || ||||| ||||||| || ||||||||||| || ||||||||||||||||| ||| | Sbjct 826255 CGCCAGGTAAGCCCAGCTTTTTCCCGTCCAGATGTAAGTCACATCACCGCACCAGACCCG 826314 Query 33394 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 33453 ||| |||| ||| | || ||||| | || || | |||||||| ||| ||||| | Sbjct 826315 ATTAGGCTTGGTAAAAGCAAACTGGCGATCCAGATGATTAGGGATCTCAATGTGTTCCTT 826374 Query 33454 ACCACCACGT-TTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCA 33512 | || | | ||||| || || || | ||||||||||| | ||| ||| || Sbjct 826375 AG-ACGCCTTCTTATAACGATGGCCAGGTTTCTGACAGCTGATAATATTGAGCGCTTGCA 826433 Query 33513 TGAGCCTGCCAGCAAGCCAGCGTCCCA-TCTGGTAGCCTCTCCGGGTTGCCATTGTGGCG 33571 | ||| | || |||| || | || | | || ||| | | | |||| | ||| Sbjct 826434 TTAGCTTTGTTGCCCGCCAACGGCTCAGTTTTATA-CCTTTGGTGATGACCATCGCGGCA 826492 Query 33572 ATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGT 33631 ||||||| ||||| || || |||| || || || | ||| | || | ||| || Sbjct 826493 ATGCTTCGCGCTCCTGCTGAGCCGTTACTTTCGCGATAAACTTCACGCACAAGGCTGAGT 826552 Query 33632 AATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTG 33691 ||| | | | |||| | || | || | ||||||| | || |||||| Sbjct 826553 AATGTCACTCTCGTAGCGTCAAGCTTCTTGGGCTGCCG---CCAGTATTTATAACTGCTG 826609 Query 33692 CGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATGCGCTCTGAGTTTCCCG 33751 ||||||| ||| ||||| | || | | | |||||| | || | ||| ||||| | Sbjct 826610 CGATGAATCCCAAACACGTTGCCTACAACGGCAACAGGAAACCGCACCCTGTGTTTCTCA 826669 Query 33752 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 33811 | || ||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 826670 ACTAATGAGAATTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATAT 826729 Query 33812 CATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 33871 | |||||||||||| |||||| || ||||| | || ||||| |||||||| || || | Sbjct 826730 CCCTCTCCATTTCAACGCGTTGAAGTCTTTTCTTTAGGTCACGTATTTCAATCTGCTCAG 826789 Query 33872 GGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCC 33931 | || || || || || | |||| ||||||| ||||| || ||||||| | || Sbjct 826790 GTGTCATAGGTGAAGCAGTGGGTGATTTGCCCGCTCGCTCTTCTTTCAGTTGTCGAATCC 826849 Query 33932 ATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATT 33991 || | ||| ||||| || || | ||| || | | | | || || ||||| | Sbjct 826850 ATTTATCCATAGTGGATTTACCGACGTTCATTGCCGTAGTCGTGGCGGCAACGGTGTAAT 826909 Query 33992 TCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT---TCttt 34048 ||| || | || || || || | |||| | ||| || | ||||||||| ||| | Sbjct 826910 GCTGATCGAGTACAAGCTGGGCAGCTTCGAGGCGAAATTCGGGGCTAAAATTGCGTCTGT 826969 Query 34049 t------tttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGG 34102 | |||| ||||| | || | |||||||| ||||||||||| || ||| Sbjct 826970 TACGTCCGGTCATAATGTCACCTTTTTTACTGTGAGGTGATGATATCACCTCTATTTAGG 827029 Query 34103 TGGCCAAATTCAGTGTGCCACTTCA 34127 |||||||||| | ||| ||||| || Sbjct 827030 TGGCCAAATTTACTGTACCACTACA 827054 >seq505 Length=203535 Score = 269 bits (298), Expect = 7e-68 Identities = 548/804 (68%), Gaps = 31/804 (4%) Strand=Plus/Plus Query 33338 AGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 33397 || || ||||||| || ||||||||||||||||||||||| |||||||| ||||||| Sbjct 29923 AGATAAGCCCAGCATTTTCCCGTCCAGATATAGGTCACATCGCCGCACCAGACCTGATCC 29982 Query 33398 GGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCA 33457 ||| |||| || ||||| || | || || | ||| || || |||||||||| | || Sbjct 29983 GGCGCGGTAACTGCGAAATGGCGGTCGAGATGGTTCGGTATTTCAACATGTTCGTTCCCG 30042 Query 33458 CCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGC 33517 || ||||| || || | ||| ||| || ||| | | ||||||||||||| ||| Sbjct 30043 CCGCGTTTGTATTTATGCGCCGGTACCTGGCAACTGCCGATATCCAGCTCTTTCATCAGC 30102 Query 33518 CTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTT 33577 | || || ||||| || || | | ||| | | | |||| |||||||| ||| Sbjct 30103 TTACCTGCCAGCCATCGCCCGAGGCTGACGCCCTTGGCGCTAACCATCGTGGCGATACTT 30162 Query 33578 CTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGTACCTGACTGCGTAATA 33635 || || || || || || ||| | ||| | ||| || | || ||| | Sbjct 30163 CTCGCACCAGCAGAGCCACCACTGGCGTTCCAG--ACTTCACTGACGGGGCTCCGTTTGA 30220 Query 33636 CAGCCCGTCTGCCGTCTGGTTTTTCAGGACGG----TTTTTCCA--GTATCTGTAGCTGC 33689 | || || ||| ||| || | || | |||||| | ||| | || |||| Sbjct 30221 CGGCACGCCTGGCGTGAGG------ACCACTGCTATTTTTTCGAATGTAGCGATAACTGC 30274 Query 33690 TGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATGCGCTCTGAGTTTCC 33749 | || ||||| ||||||| |||| | || | | || |||||||||| || | Sbjct 30275 TTCGGTGAACACCGAACAGTCGGCACAATGGCGCTGCCGGGTAATGCGCTCCTAGACTGT 30334 Query 33750 CGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATAT 33809 | ||||||| |||||||||||||| || |||||||||||||||||||||||||||| || Sbjct 30335 CTATTATCGTGAACTGTTCAGGGAATCCGACATCAAGAGCGCGGTAGCCTTTTTTAGGAT 30394 Query 33810 TTCATTCTCCATTTCAATGCGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAATTTG 33866 || ||||||||||||| |||||||| ||||| || | || | || |||| | || Sbjct 30395 TTAATTCTCCATTTCAGGGCGTTGTATTCGCTTT---CTCATTTCCCTGAGTTCAGTCTG 30451 Query 33867 TTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGC--AGTTGT 33924 || || || | || | || |||| ||||| ||||| || || | | Sbjct 30452 CTCAGGCGTCAGAGGCACCCCCGGGGGCATTTTTCCCTGGCGCTC--CATGCTAAACGAT 30509 Query 33925 TTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCC-AC 33983 || ||||| | | || | | | |||| || | ||| || || || || | |||| Sbjct 30510 TTTACCCAGCGGTTAATGGCGTAGAGGCTGACGTTCATCGCCTTAGCCGC-TTTGCCGTG 30568 Query 33984 CGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT 34043 ||||| ||||| || | ||||||| || | |||| |||||| || || |||| Sbjct 30569 AGTGTAGTTCTGATCCAGGACCAGTTTTGCCGCTTCGACTTTAAATTCAGCAGTAAA--- 30625 Query 34044 TCtttttttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGT 34103 | ||| ||||||| ||||||| | ||||||||||||||| ||| |||||| Sbjct 30626 TGCTTTGCTCATTGGTTCACCTGTAAAATGTAGAGGTGAGCATATCATTTCTACTCAGGT 30685 Query 34104 GGCCAAATTCAGTGTGCCACTTCA 34127 ||||||||||||||||| ||| || Sbjct 30686 GGCCAAATTCAGTGTGCAACTACA 30709 Score = 203 bits (224), Expect = 8e-48 Identities = 508/759 (67%), Gaps = 16/759 (2%) Strand=Plus/Minus Query 33377 TCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGG 33436 ||||||||||| ||||| | ||| ||| || | |||||| | | || | ||| || Sbjct 97903 TCACCGCACCAGACCTGGTCTGGTGAGGTGACCGTGAACTGGCGGTTGAGATGGTTGGGT 97844 Query 33437 ATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACC 33496 | |||||||||| | || || ||||| || ||| | | | ||| || ||| | Sbjct 97843 CTCTCAACATGTTCGTTGCCGCCGCGTTTGTATTTGTGCGCCAGTACCTGGCAACTGGCG 97784 Query 33497 AGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTC--TCC 33554 | ||||||||||||| || | || || |||||||| ||||| | || ||| Sbjct 97783 ATGTCCAGCTCTTTCATCGGCTTACCGGCCAGCCAGCGGCCCATTTTTACACCAGAGTCC 97724 Query 33555 GGGTTGCC-ATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTA 33611 | || | || | |||||||||| || |||| || ||| |||| | ||| | Sbjct 97723 ATGGTGACGATGGAAGCGATGCTTCGGGCATCGGCAGAGCCGCCGCTGGCGTTCCAGGC- 97665 Query 33612 GCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTT 33671 | | | ||||| |||||| | | || ||||| || | | || || Sbjct 97664 -CACCATAACCTGGCTGCGTTTAGCCACGCGCTCACCGTCGGGCTCATT-GGCCGAAGCC 97607 Query 33672 T-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGA 33730 | ||||| |||||||||||||||||||| | || ||||| | | | || ||| Sbjct 97606 TGCCAGTGCCTGTAGCTGCTGCGATGAACTTCAAAAGTCTGGCACAACGCGGAAACCGGA 97547 Query 33731 TAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCG 33790 || ||||||| || | ||| || || |||| ||| || ||||| ||||| ||||| | Sbjct 97546 TACCGCGCTCTCAGCCTGTCGACTACCGTGAACCGTTGAGTGAGTCCGACATTAAGAGAG 97487 Query 33791 CGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCT 33850 | ||||||||||||| ||||||||||||||||||| ||||| | |||||| | | | Sbjct 97486 CCGTAGCCTTTTTTAGGATTTCATTCTCCATTTCAAGACGTTGGA-TTTTTTCTTCATTT 97428 Query 33851 CACGGATTTCAATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGACGC 33909 |||| | || | || || || || | | || || | || ||||| ||||| ||| Sbjct 97427 CACGCAAATCGAGCTGCTCTGGCGTCA-GAGGAAGTCCGGCAGGCGTTTTACCCTGGCGC 97369 Query 33910 TCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTG 33969 || ||| | || ||||| | || || | ||| ||| |||| | || | Sbjct 97368 TCGAGTTTCAGCTTATTAACCCAGCGGGTAATAGCTGAATGGCTGACATTAACCGCCTCA 97309 Query 33970 GCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAAC 34029 ||||| | | | || || ||||| |||||||| | || | |||| | ||||| Sbjct 97308 GCGGCCTTTACGTAGGTATAGCCGTGGTCGACAACCAGCTTTGCTGCTTCGAGCTTAAAT 97249 Query 34030 TCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTT-CTGAGGTGAGCATAT 34088 ||||| | |||| ||| |||| || ||||||| |||| |||||||||||||| Sbjct 97248 TCTGCCGTGAAAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTTGAGGTGAGCATAT 97192 Query 34089 CACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 34127 |||||| | ||||||||||| || |||||||||| || Sbjct 97191 CACCTCCGATCAGGTGGCCAGTATCCGTGTGCCACTACA 97153 Score = 194 bits (214), Expect = 4e-45 Identities = 228/310 (74%), Gaps = 19/310 (6%) Strand=Plus/Minus Query 33818 CCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAA 33877 |||||||||| |||| || | |||| | | |||||| |||||||||| ||||| || Sbjct 27172 CCATTTCAATAAGTTGAAGTTATTTCTTTAACTCACGAATTTCAATTTACTCCGGCGTTG 27113 Query 33878 TGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTG 33937 | || ||||||| || |||| |||||| | ||||||||| || | | Sbjct 27112 TTGGCGAGGCTTGGGGCATTTTTCCCTGATGTTCATCACGC------------CAGCGAG 27065 Query 33938 TCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGT 33997 |||| || ||||| || |||| ||| |||| | || | || || | ||||| | ||||| Sbjct 27064 TCATGGTAGAAAGCCCTACATACATCGCTTAGCCG-CTTCAGCAATGGTGTAATGCTGGT 27006 Query 33998 CAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTG 34057 | ||||| ||| | || ||||||||||| || ||||| ||||||||| || ||| Sbjct 27005 CGACAACAAGTGGGGCTGATTCGCGTTTGAAATCTGCACTAAAATTTTTT------ATTA 26952 Query 34058 GAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTG 34117 | |||||||| |||| ||||| ||||||||| | ||||||||||||||||||||| | Sbjct 26951 GGGCACCTGTTATGTTATGAGGCAAGCATATCAGATTTGTTCAGGTGGCCAAATTCAGAG 26892 Query 34118 TGCCACTTCA 34127 |||||| || Sbjct 26891 CGCCACTACA 26882 >seq122 Length=4874392 Score = 125 bits (138), Expect = 2e-24 Identities = 234/344 (68%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 21567 CCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCC 21626 || || ||||| |||||||| || |||||| || | ||||||||| ||| || | || Sbjct 4802363 CCGCCCAGCATCTGCATGGTGCCGCCAACGTTAACCACAACTTCGGTGGTGTACTTCTCA 4802304 Query 21627 TGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 21686 || || || |||||| | ||| ||| | |||||| | |||||||| |||| Sbjct 4802303 ACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTGAGAG 4802244 Query 21687 CCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGC 21746 ||||| ||||| ||||| | ||| | ||| ||||| || ||| || || ||||||||| Sbjct 4802243 CCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCGGTGC 4802184 Query 21747 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 21806 || || || | ||| || || || || ||||| || ||||| ||| || ||||| Sbjct 4802183 CATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGTAGCC 4802124 Query 21807 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCA 21866 | || | ||| |||| || || || || | | ||| || || ||||| Sbjct 4802123 AGAGTGATGTTGGCAACGGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCCTGCCCC 4802064 Query 21867 AGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 || || | | || || || |||||||||||||| ||||| Sbjct 4802063 AGATTTCCGACTAAAATTACTTTGTTTACGCCTCTGCTGGCCAT 4802020 >seq746 Length=29260 Score = 100 bits (110), Expect = 7e-17 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 21566 GCCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATC 21625 |||||| | ||||||||| || ||||| ||| || | ||| || || ||| | || Sbjct 138 GCCACCCAACATTTGCATAGTGCCACCCACGTTAACCACAACCTCCGTTGTGTAATGCTC 79 Query 21626 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 21685 | | |||| |||||| ||||| |||| ||| |||| | |||||||| ||||||| || Sbjct 78 CAGCCCGCCTTGATCTTGCCACTTTCGTGTACGCAGCTGGCCTTCAATGTAAACCTGTGA 19 Query 21686 GCCTTTTCGCAGATATTC 21703 |||||| ||||||||||| Sbjct 18 GCCTTTACGCAGATATTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124806717044030