Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq1959 89.7 1e-13 seq154 86.0 2e-12 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 22070 GCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTTGA 22129 |||||| || | ||||| ||||| ||||| || |||||||| ||||| || | ||| || Sbjct 9615 GCTGGCTAAGTCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGA 9674 Query 22130 CGCCAGATACACAAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCG 22183 ||| | |||||||||||| | |||||||| ||||| || ||| |||| || Sbjct 9675 CGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCG 9728 >seq154 Length=560718 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 16905 TGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTTTCACGCG 16964 ||||||| |||||||||| ||||| ||||| || || || |||||| ||| Sbjct 275553 TGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCCTTATCACAGCTTAACCGCT 275494 Query 16965 ATGTTGAGAAGCGGCCAAACAAGCGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCA 17024 | ||| |||| || | || || || ||| ||||||||||||| |||||| | Sbjct 275493 CATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGATTTGCGTGAGTCAGGATCGA 275434 Query 17025 TTGAACAGGATGCAGACTCAATCATCATGCTTTACCGTGAAGCGGTATACGACGAGAACA 17084 |||| |||||||| |||| ||||| | | || ||||| | ||| || |||| |||| Sbjct 275433 TTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGACGAGGTGTATCACGAAAACA 275374 Query 17085 GT 17086 || Sbjct 275373 GT 275372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132319758234118