Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq154 581 2e-161 seq122 529 1e-145 seq1959 100 2e-16 >seq154 Length=560718 Score = 581 bits (644), Expect = 2e-161 Identities = 903/1281 (70%), Gaps = 18/1281 (1%) Strand=Plus/Minus Query 71364 ATGCTTGATAACTGCCGCTGGGATGAAGTTGCAGATCGTATAGTTGCTGATGATTTTTAT 71423 ||||| ||||| |||||||| | ||| |||| || | || || || ||||| ||| Sbjct 276532 ATGCTCGATAATGAGCGCTGGGACAATGTTTCAGAACGCGTTGTCGCAGAAGATTTCTAT 276473 Query 71424 ACCAGTGCTCATCGTGAAATTTTCAGTGAGATGGAGAGGTTATTAAGTCATGGCAAACCG 71483 | | || | |||||| || ||| ||||||| | | || | || || |||| Sbjct 276472 AGCCGTCCCCATCGTCTTATCTTCTCTGAGATGCATCGTCTACTGGAGCAAGGGCAACCT 276413 Query 71484 ATTGATTTGATAACACTTGCTGAAGCACTTGAACAGAACGGTAAATTAGAACGCGCCGGT 71543 |||||| |||| || || | ||| | ||||| | || | ||||||| ||||| Sbjct 276412 ATTGATCTGATCACGCTGTCAGAATCCCTTGAGTTGCGTGGCGAGTTAGAACTGTCCGGT 276353 Query 71544 GGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTGTGCT 71603 || ||||| ||| | || || || | || || || || || | || ||||| |||| Sbjct 276352 GGATTTGCTTACTTAGCCGAACTGGCCAAAAATACCCCGAGTGCCGCGAATATCGGTGCG 276293 Query 71604 TATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAATGAA 71663 ||||| || || ||||| ||||| || ||||| ||||| ||||| || || || || || Sbjct 276292 TATGCCGACATTGTTCGCGAACGTGCAGTTGTGCGTGAGATGATCTCAGTTGCCAACGAG 276233 Query 71664 ATAGCCGAAGCTGGATATG---CGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATATG 71720 || ||||| || || | || | |||| ||| | ||| | || | |||||| | Sbjct 276232 ATCGCCGATGCAGGGTTTGATCCTCAGG--GGC-GTTCTAGCGAAGATCTTCTGGATCTC 276176 Query 71721 GCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGAC---AAAAGAGCGGTAGTGGTCCA 71777 ||||| |||| ||| | || || |||||||| | |||| || ||||| Sbjct 276175 GCCGAATCGAGCGTATTTAAGATCGCCGAAAAACGGGCGAATAAGAACGAA---GGTCCG 276119 Query 71778 AAAGATATCGCCAGCA--TTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTT-TCAG 71834 || |||||| |||| |||| || || ||| | ||| || |||| ||| | || Sbjct 276118 CAAAATATCG--AGCAAATTCTTGAGGCGACGATCAATCGTATCGAAGCCTTGGTATCGA 276061 Query 71835 CGACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGACG 71894 || || ||||||||||| || ||| |||||||||| | | ||||| |||||||| || Sbjct 276060 CG-CCTCATGATGGTGTTACCGGGGTTGATACGGGTTATCAAGATCTGAATAAGAAAACC 276002 Query 71895 GCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACC 71954 || ||| | ||| || ||||| || || ||||| || || ||||| ||||| || || Sbjct 276001 GCTGGGTTACAGGGATCGGATCTAATTATCGTCGCGGCACGTCCATCGATGGGTAAAACT 275942 Query 71955 ACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTT 72014 || || || ||||||||| |||||||| ||| | | | || ||||| ||| | | Sbjct 275941 ACCTTCGCAATGAATCTCTGTGAAAATGCAGCAATGCTACAAGACAAGCCGGTACTCATC 275882 Query 72015 TTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGC 72074 || || | |||||||| ||| | ||||| |||||||| |||||||| | | || Sbjct 275881 TTCAGTTTAGAGATGCCCAGCGAACAGCTAATGATGCGTATGCTGGCTTCCTTATCGCGT 275822 Query 72075 GTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCT 72134 || |||||||| ||| |||| || ||||| ||||||||||||||||||| | ||| Sbjct 275821 GTCGATCAGACCAAGATTAGGACCGGCCAACTCGACGACGAGGATTGGGCGCGCATCTCT 275762 Query 72135 GGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTG 72194 | | ||||| ||||| || || || |||| || ||||||||||| | | ||| Sbjct 275761 GCAACGATGGGGATTCTATTAGAGAAAAAGAACATCTTTATTGATGATGCCTCTGGTCTG 275702 Query 72195 ACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGC 72254 || ||||| || ||||||| ||||| | | | || |||||| ||| || || Sbjct 275701 ACCCCGACTGAAGTACGTTCACGCGCGAGAAGAATCTACCGTGAAAATAATGGCTTAAGT 275642 Query 72255 ATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACG 72314 ||||| |||||||| ||||| || | ||||| || || | |||| || ||||| || Sbjct 275641 ATGATCATGATCGATTACCTTCAGTTGATGCGAGTGCCTGCGCTGACCGAAAACCGGACC 275582 Query 72315 CTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG 72374 | || ||||| ||||| || || || |||| || |||||||| ||| | | ||||| Sbjct 275581 TTAGAGATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCA 275522 Query 72375 GTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTA 72434 ||||| || || ||||| ||||| || || | || ||||| || || ||||| || || Sbjct 275521 GTGGTCGCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTC 275462 Query 72435 AATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTG 72494 || |||||||| ||||| |||||| | ||||||||||| || ||| |||| |||||| | Sbjct 275461 AACTCAGATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATC 275402 Query 72495 TATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC 72554 ||||| ||||| || |||||| | || || | || ||||| || || | |||||| Sbjct 275401 TATCGTGACGAGGTGTATCACGAAAACAGTGATCTTAAAGGCATCGCGGAAATTATTATC 275342 Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614 || ||||| || ||||| || || || |||||| || | | ||||| || |||| ||| Sbjct 275341 GGTAAGCAGCGTAATGGTCCTATCGGTACGGTGCGACTCACCTTTAATGGGCAATGGTCA 275282 Query 72615 CGGTTTGATAACTATGCCGGT 72635 || |||||||||||||||||| Sbjct 275281 CGTTTTGATAACTATGCCGGT 275261 >seq122 Length=4874392 Score = 529 bits (586), Expect = 1e-145 Identities = 776/1095 (71%), Gaps = 2/1095 (0%) Strand=Plus/Plus Query 71541 GGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTGT 71600 ||||| ||||| || || || ||| |||| || || ||||| || |||| || ||| | Sbjct 4792779 GGTGGCTTTGCTTATCTGGCTGAGCTGTCGAAAAATACGCCAAGTGCGGCGAACATTGGC 4792838 Query 71601 GCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAAT 71660 |||||||| |||||||| || ||||||||||| || ||||| |||||| | || || ||| Sbjct 4792839 GCTTATGCCGATATCGTGCGCGAACGCGCGGTAGTACGTGAGATGATTGCGGTGGCGAAT 4792898 Query 71661 GAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATATG 71720 || || ||||| || || || | | | | ||| | |||| | || |||| ||| | Sbjct 4792899 GAGATCGCCGACGCGGGTTACGATCCGCAGGGCCGTACCAGCGAGGATCTGCTCGATCTC 4792958 Query 71721 GCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGACAAAAGAGCGGTAGTGGTCCAAAA 71780 || || |||||| || | || || |||| || || | | | || || ||| Sbjct 4792959 GCTGAATCCCGCGTATTCCAGATCGCCGAAAGCCGCGCCAATAAAGATGACGGCCCGAAA 4793018 Query 71781 GATATCGC-CAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAGCGACC 71839 ||| ||| || ||||| || || | | || || ||| | | | |||| || Sbjct 4793019 AGCGTCGATCAG-ATCCTCGAAGCCACCATTGCGCGTATTGAATCGCTCTATCAGACGCC 4793077 Query 71840 ACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGACGGCAGG 71899 || || || ||||| || | ||||| || | | ||| || || |||||||| ||||| Sbjct 4793078 GCACGACGGGGTAACCGGCGTCGATACCGGCTATCACGACCTGAACAAGAAGACCGCAGG 4793137 Query 71900 GCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTT 71959 || |||| || ||||| || || || || || || || | ||||| || ||||| || Sbjct 4793138 TCTGCAGCGCTCGGATCTGATTATCGTGGCGGCTCGTCCGGCAATGGGTAAAACCACCTT 4793197 Query 71960 TGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAG 72019 || ||||| || ||||| ||||| | | | ||||| || || || | || || Sbjct 4793198 CGCCATGAACCTGTGTGAAAACGCCGCGATGCTGCAGGATAAACCGGTGCTGATCTTCAG 4793257 Query 72020 CCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGA 72079 ||| |||||||| || | ||| | |||||||| ||||| || || ||||||| || Sbjct 4793258 CCTCGAGATGCCCGGCGAGCAGATCATGATGCGTATGCTGGCGTCGCTGTCACGCGTGGA 4793317 Query 72080 TCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGC 72139 ||||| || ||||| || || || || | || ||||| |||||||| | || || | Sbjct 4793318 CCAGACGCGCATTCGTACCGGCCAGCTGGATGATGAGGACTGGGCGCGTATCTCCAGCAC 4793377 Query 72140 AATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGACGCC 72199 ||||| || ||| |||| ||| |||| || ||||| |||||||| || ||||||||| Sbjct 4793378 CATGGGCATCCTGCTGGAGAAGAAGAACATGTTTATCGATGACTCTTCCGGCCTGACGCC 4793437 Query 72200 GACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATGAT 72259 || || | || || || || || ||| | | || | || ||| |||||||||| Sbjct 4793438 AACCGAAGTCCGCTCGCGTGCGCGCCGTATCTTCCGCGAGCACGGCGGTCTGAGCATGAT 4793497 Query 72260 TATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTGGA 72319 ||||||||||||||||| || |||||||| || ||| |||||||| |||||||| Sbjct 4793498 CATGATCGACTACCTGCAGCTGATGCGCGTGCCGTCACTGTCCGATAACCGTACGCTGGA 4793557 Query 72320 AATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGT 72379 || |||||||| || ||||| || ||||| ||||||| || | || || |||||||| Sbjct 4793558 GATCGCCGAGATCTCACGCTCGCTTAAGGCACTGGCGAAAGAGCTGCAGGTGCCGGTGGT 4793617 Query 72380 GGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTC 72439 ||| |||| || ||||| || || || || |||||||| || || || ||||| || || Sbjct 4793618 GGCGCTGTCGCAGCTTAACCGCTCCCTGGAGCAGCGTGCCGATAAGCGCCCGGTCAACTC 4793677 Query 72440 AGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCG 72499 || | |||||||| || | || |||||||| || |||||||| |||||| | || || Sbjct 4793678 CGACCTGCGTGAATCCGGCTCCATCGAGCAGGATGCCGACCTGATCATGTTTATCTACCG 4793737 Query 72500 CGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAA 72559 || || || |||||| | ||||| |||| || | || ||| | ||| | || || Sbjct 4793738 TGATGAGGTGTATCACGAAAACAGCGATCTGAAAGGGGTGGCGGAGATCATTCTGGGTAA 4793797 Query 72560 GCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTT 72619 ||| || || ||||| || ||||| ||| | || | ||||||||||| | ||||| || Sbjct 4793798 GCAGCGTAACGGCCCCATCGGCACCGTGCGCCTGACCTTTAACGGCCAGTGGTCACGCTT 4793857 Query 72620 TGATAACTATGCCGG 72634 |||||||| || || Sbjct 4793858 CGATAACTACGCGGG 4793872 Score = 158 bits (174), Expect = 7e-34 Identities = 236/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || ||||||||||| || | | || | |||||||| |||||||| | | || || Sbjct 4802032 GGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGACCCGGAAGTTCGCTACATG 4802091 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 || |||||||| || || | | ||| | || || ||||| |||||||||||| Sbjct 4802092 CCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACCTCCGAATCCTGGCGCGACAAG 4802151 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 || || ||| || |||||| |||| |||||||| || || ||||||| || || Sbjct 4802152 CAGACCGGCGAAACCAAAGAGAAAACTGAATGGCACCGCGTTGTGCTGTTCGGCAAGCTG 4802211 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 |||||| | || |||| || | || ||||| |||||||| || |||||||| ||| Sbjct 4802212 GCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATCGAAGGCGCACTG 4802271 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 | |||||||| ||||| || | || || || || ||||| || ||| || | || Sbjct 4802272 CAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAAGTTGTGGTT 4802331 Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCG 21397 | | |||||||||||||| ||| | |||| ||| Sbjct 4802332 AACGTTGGCGGCACCATGCAGATGCTGGGCGGTCG 4802366 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 70930 TCCGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTC 70988 || ||||| ||||||||| ||||||||| ||||||||||||||| |||| | ||||| Sbjct 217251 TCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTC 217192 Query 70989 AAGTCCGGTAGGGGCCACCATATTT 71013 |||||| | |||||||||| |||| Sbjct 217191 AAGTCCAGCTGGGGCCACCAGATTT 217167 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 86621 GATAAGGTTAACGTTGATCTGGCTGCCAGCGGTGTGGCGTACAAAGAGCGATTGAACATA 86680 || |||||||||||||||||||| ||| || ||||||| |||||||| | ||||| Sbjct 1624045 GACAAGGTTAACGTTGATCTGGCCGCCGCAGGCGTGGCGTTTAAAGAGCGTTATAACATG 1623986 Query 86681 CCTGTCATAGCTGAACAGGTAGCCCGCGAGCAACCAGA 86718 || ||||| || ||| ||| | |||||||| ||||| Sbjct 1623985 CCGGTCATCGCCGAAATGGTTGAGCGCGAGCAGCCAGA 1623948 >seq1959 Length=43063 Score = 100 bits (110), Expect = 2e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 70929 ATCCGGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTC 70988 || |||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||| Sbjct 8108 ATTCGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTC 8167 Query 70989 AAGTCCGGTAGGGGCCACCA 71008 || ||| ||| ||| ||||| Sbjct 8168 AAATCCAGTAAGGGTCACCA 8187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303212053962423