Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_005857.1
Length=51601
Score E
Sequences producing significant alignments: (Bits) Value
seq302 118 3e-22
seq1214 104 8e-18
seq1959 84.2 7e-12
>seq302
Length=239003
Score = 118 bits (130), Expect = 3e-22
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 12020 CTGGCAGTACGGGAACGGCCATTCAGAATGCAGGGAGCAACTTTCAGTTTAATGCGAAAG 12079
|||||| | ||||| ||| || ||||||| ||||| || || | || || || |
Sbjct 172714 CTGGCAATGTAGGAACAGCCCTTACCAATGCAGCAAGCAATATTAAGCTCAACGCCAAGG 172773
Query 12080 GCGGCGTTTACGATTCTCCTTCTTTAAGTGCCTACAGCAACCAGATCCACGATACCCCGC 12139
|||||||||||||||| ||||| | || | ||||| || ||| | || | ||
Sbjct 172774 GCGGCGTTTACGATTCACCTTCCCTCAGCTCTTACAGTAATCAGGTTTACACCTCACCAA 172833
Query 12140 AATTCTTCGCCTTTGCTAAAGGGGCTGGCGTTTTTGGCGAAGCAGGACCTGAGGCCATTA 12199
| | || |||||||||||||| |||||||||||||||||||| || || ||||| || |
Sbjct 172834 AGCTATTTGCCTTTGCTAAAGGCGCTGGCGTTTTTGGCGAAGCGGGGCCGGAGGCAATCA 172893
Query 12200 TGCCGCTGACGCGTG 12214
|||| | || ||||
Sbjct 172894 TGCCCTTAACTCGTG 172908
>seq1214
Length=17919
Score = 104 bits (114), Expect = 8e-18
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 32515 ACCACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCCA 32574
||||||||||||||||||||| | |||||| ||| ||| ||||||||||||||||
Sbjct 10468 ACCACCGGAGTTCCTACACTCATGGGTGGTAGCCCGGACGGGGGTAGGAATACCGGCAAC 10527
Query 32575 ATCAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCAT 32619
| | ||||||||||||||| ||||||| ||| | ||||||||
Sbjct 10528 CTTGGAAACCGGCCAGCCCGAAGGCTGCCCCGCCCGGGCCACCAT 10572
>seq1959
Length=43063
Score = 84.2 bits (92), Expect = 7e-12
Identities = 117/162 (72%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 33201 TTTGGATGTCGTTTCAAACCCCATACGCCCACGGATAAGCCACTGGAAAGGAATTGTTAG 33260
||| ||||| || || || |||| ||||| | |||||||| || ||||| || ||
Sbjct 682 TTTCGATGTTGTCTCGAAGCCCACCTTTCCACGAAATAGCCACTGAAATGGAATCGTCAG 623
Query 33261 CAGATACAGTGGCACGAACCACAGGCGGTTCAAACGCTGCCAGAACGTCGCATCACGGCT 33320
||| || || |||||||||| ||| |||| ||||||||||| | |||||| |||
Sbjct 622 GCAATAGAGCGGAACGAACCACATGCGATTCAGGCGCTGCCAGAATTTGGCATCA--GCT 565
Query 33321 CTCCAT--CCATTCAGTGTTATCGACGACTTGATAGGCAAAA 33360
|| | | ||| | ||||| || || || |||||| | |||
Sbjct 564 CTGCTTTGCCACACCGTGTTGTCAACAACCTGATAGTCGAAA 523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164989328315378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |