Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq302 118 3e-22 seq1214 104 8e-18 seq1959 84.2 7e-12 >seq302 Length=239003 Score = 118 bits (130), Expect = 3e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 12020 CTGGCAGTACGGGAACGGCCATTCAGAATGCAGGGAGCAACTTTCAGTTTAATGCGAAAG 12079 |||||| | ||||| ||| || ||||||| ||||| || || | || || || | Sbjct 172714 CTGGCAATGTAGGAACAGCCCTTACCAATGCAGCAAGCAATATTAAGCTCAACGCCAAGG 172773 Query 12080 GCGGCGTTTACGATTCTCCTTCTTTAAGTGCCTACAGCAACCAGATCCACGATACCCCGC 12139 |||||||||||||||| ||||| | || | ||||| || ||| | || | || Sbjct 172774 GCGGCGTTTACGATTCACCTTCCCTCAGCTCTTACAGTAATCAGGTTTACACCTCACCAA 172833 Query 12140 AATTCTTCGCCTTTGCTAAAGGGGCTGGCGTTTTTGGCGAAGCAGGACCTGAGGCCATTA 12199 | | || |||||||||||||| |||||||||||||||||||| || || ||||| || | Sbjct 172834 AGCTATTTGCCTTTGCTAAAGGCGCTGGCGTTTTTGGCGAAGCGGGGCCGGAGGCAATCA 172893 Query 12200 TGCCGCTGACGCGTG 12214 |||| | || |||| Sbjct 172894 TGCCCTTAACTCGTG 172908 >seq1214 Length=17919 Score = 104 bits (114), Expect = 8e-18 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32515 ACCACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCCA 32574 ||||||||||||||||||||| | |||||| ||| ||| |||||||||||||||| Sbjct 10468 ACCACCGGAGTTCCTACACTCATGGGTGGTAGCCCGGACGGGGGTAGGAATACCGGCAAC 10527 Query 32575 ATCAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCAT 32619 | | ||||||||||||||| ||||||| ||| | |||||||| Sbjct 10528 CTTGGAAACCGGCCAGCCCGAAGGCTGCCCCGCCCGGGCCACCAT 10572 >seq1959 Length=43063 Score = 84.2 bits (92), Expect = 7e-12 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 33201 TTTGGATGTCGTTTCAAACCCCATACGCCCACGGATAAGCCACTGGAAAGGAATTGTTAG 33260 ||| ||||| || || || |||| ||||| | |||||||| || ||||| || || Sbjct 682 TTTCGATGTTGTCTCGAAGCCCACCTTTCCACGAAATAGCCACTGAAATGGAATCGTCAG 623 Query 33261 CAGATACAGTGGCACGAACCACAGGCGGTTCAAACGCTGCCAGAACGTCGCATCACGGCT 33320 ||| || || |||||||||| ||| |||| ||||||||||| | |||||| ||| Sbjct 622 GCAATAGAGCGGAACGAACCACATGCGATTCAGGCGCTGCCAGAATTTGGCATCA--GCT 565 Query 33321 CTCCAT--CCATTCAGTGTTATCGACGACTTGATAGGCAAAA 33360 || | | ||| | ||||| || || || |||||| | ||| Sbjct 564 CTGCTTTGCCACACCGTGTTGTCAACAACCTGATAGTCGAAA 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164989328315378