Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005886.2 Length=47399 Score E Sequences producing significant alignments: (Bits) Value seq620 132 1e-26 >seq620 Length=44282 Score = 132 bits (146), Expect = 1e-26 Identities = 404/617 (65%), Gaps = 13/617 (2%) Strand=Plus/Minus Query 23836 CCTTCGTCGGCAACGTCAAGCGATGAGAACCGCTGCCCCGT-GACAGTAAGCCCAAGTTT 23894 || |||||||||||||| | ||| || |||| || || | | | ||||| |||| Sbjct 17864 CCCTCGTCGGCAACGTCCATCGAACCGAGGCGCTTGCCTGTTGGCTCAATGCCCA-GTTT 17806 Query 23895 CACATCCGCATCGATCGCGGCATCGATCCATTCGAGCGGGATAAGCACACCCTCAGCGGA 23954 || | |||||||| || || | |||||| |||||| ||||| |||||||| || Sbjct 17805 GACGTGTGCATCGATAGCAGCCCGCACCCATTCATTCGGGATCAGCACGCCCTCAGCTGA 17746 Query 23955 TGCGCTGTAGTCGATGTCGATTTCCTGTGCGACGACGAGCGCATTGA--ATTTCTGTTT- 24011 ||| ||| | | ||||| |||||| || ||||| | | ||| |||| || Sbjct 17745 AGCGGAGTAATTCAGGTCGAGTTCCTGCGCCACGACCACGGGGTTGTCGATTTTTGCGCA 17686 Query 24012 CTGCTTCTTATACCACTCGTCATCTTTGCGCGGATCGTCGCGCCAATGCATCGTTTTCAC 24071 || || || ||||| | || ||||||||||||||| |||||| || | ||| || Sbjct 17685 CTCTTTGTTGTACCAGGCATCGTCTTTGCGCGGATCGCTGCGCCAGTGGAACGTGAATAC 17626 Query 24072 CTTAACGCGACCGGAGAAACGTTTCTCAGCAAACGGATTGTTAAGCCCATTGACGGACGA 24131 | | ||| ||| | || |||| || ||||| || | || ||||| ||||| Sbjct 17625 CGGGATGCGGCCGCCGTGGCGCTTCTGTGCGAACGGGTTAGCCATGCCGTTGACCGACGA 17566 Query 24132 AATATCGATACGACAGTTCGTCGTTGCCGCAAGCGCCGTATCTACCGCTTGCGCGTTCTC 24191 | |||||||| ||| || ||| | || |||| || ||| || || | Sbjct 17565 CAGGTCGATACGGCAGCGGGTGGTTTGTGACAGAGCCGCGTCGACCAGCAACG-GTCGTT 17507 Query 24192 CAA-GTGTGCCGCTTCGTCGACGAACTGGATCGAGACCCGGCCACCACGCCCGATGTTCT 24250 || | ||| ||||| || ||||| | | || | ||| | ||||| |||||||| | Sbjct 17506 GAAGGAATGCAGCTTCATCCACGAAATACAGCGTGGTGCGGTCGCCACGTCCGATGTTAT 17447 Query 24251 TCCCGGCTTCGCCACGAATCACCGCGCCCGTATCCGGGATGATGACGCGCATATGCGACG 24310 || ||||| || | |||||| ||||||||||||| |||||||||| Sbjct 17446 CGCCAGCTTCACCCTTCAGCACCGCTCCCGTATCCGGGAACTCAACGCGCATAT------ 17393 Query 24311 AATGGGTGTGATCGTGTGGGTTCCAGCCGCCGCGAAATTCGGGCGGAAGATGTTGCAAGA 24370 | ||| ||| | | |||||||| ||||||||| || ||| || || | || Sbjct 17392 AGGGGGCGTGCTTCTTCTCGTTCCAGCGGCCGCGAAACTCCACCGGCAGCGTTTCGACGA 17333 Query 24371 AGAAACGAACCTTGAAAAATATCGAGTCGGGGTCGCCGGCTTTATCTACAAGGTCTTCTT 24430 | ||| | || | || | || | |||||||||| | || || || |||| Sbjct 17332 ATTTACGGGCTTTCCAGAACAGCGCCTTCGGGTCGCCGGTGCTGTCCACGTACTCCTCTT 17273 Query 24431 TACGCGAACCGAAGCCG 24447 |||| |||||||| ||| Sbjct 17272 TACGGGAACCGAAACCG 17256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151543928366166