Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq134 114 7e-21 seq118 114 7e-21 seq42 114 7e-21 seq218 113 2e-20 seq104 113 2e-20 seq16 113 2e-20 seq283 111 8e-20 seq259 111 8e-20 seq8 111 8e-20 >seq134 Length=708706 Score = 114 bits (126), Expect = 7e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 142573 TAAAAAATTA---TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 142517 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 142516 CGCTCTAACCAACTGAGCTAATGGGCCG 142489 >seq118 Length=894290 Score = 114 bits (126), Expect = 7e-21 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| | ||| | || ||||||||| |||||||||| ||||||||||||||||| Sbjct 461273 AAATAAAATAAATTTGAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 461214 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||||||| ||||||||||||||||||||| || Sbjct 461213 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGGCG 461177 >seq42 Length=1911596 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1677289 AAAAA--AAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 1677346 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 1677347 CTCTAACCAACTGAGCTAATGGGCCG 1677372 >seq218 Length=548290 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 464279 AAAAACAA--TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGC 464222 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||||||||||||||||| Sbjct 464221 TCTAACCAACTGAGCTAATGGGCCG 464197 >seq104 Length=849383 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||| ||| |||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 839196 ATAAATATCAAAAAAAATATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 839137 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 839136 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 839104 >seq16 Length=3471005 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1618664 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1618605 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 1618604 TGAGCTAATGGGCCGT 1618589 >seq283 Length=316461 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 96674 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 96733 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 96734 TGAGCTAATGGGCCG 96748 >seq259 Length=358427 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 63802 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 63743 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||||||||||| || Sbjct 63742 TGAGCTAATGGGCCGGCG 63725 >seq8 Length=3403442 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2468990 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2469049 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 2469050 TGAGCTAATGGGCCG 2469064 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261471240294988