Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq275 105 6e-18 seq43 105 6e-18 seq3962 82.4 7e-11 >seq275 Length=398669 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| |||| || | | ||||| ||||| || || ||||| || Sbjct 170691 ATCCTCAAGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTT 170632 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || |||||| | | || ||| | | | || || || | ||||| Sbjct 170631 GTCCTGAATTTTGGCTTTGACGTTCTCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGAT 170572 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || |||||||||||||||||||| Sbjct 170571 AGTTTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 170536 >seq43 Length=2082672 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || ||||| || || | ||| ||||| || | || ||||| || ||||| || | | Sbjct 901311 AAATTTACTGCCCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATAT 901252 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || ||| ||| || ||||| || || ||||||| || | |||| Sbjct 901251 TGTAGTCAGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCT 901192 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| || || ||||||||||| | ||||| ||||| ||| | | || |||| Sbjct 901191 GATCTGGGGGGATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAG 901132 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || ||||| || ||||| || || || |||||||||||||| Sbjct 901131 AGGGTTCAACTTCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | || || || || ||| | ||| || ||||| || ||| Sbjct 901042 GTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCAAGCTGCTTACCG 900983 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| ||||| ||||| || || || ||||| || | || || |||||| Sbjct 900982 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTAGCCTTG 900923 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| | || | | | || || || | |||||||| || || || || || Sbjct 900922 ACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTC 900863 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 900862 TTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || ||| | ||||| | || ||||||||||| || || || |||||| Sbjct 341 TCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTG 282 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| | || | | | || || || | |||||| Sbjct 281 TCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATG 222 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || || || || |||||||| Sbjct 221 GTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256104402680