Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq122 123 1e-23 >seq122 Length=4874392 Score = 123 bits (136), Expect = 1e-23 Identities = 229/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCC 11224 ||||| |||| |||||| ||||| | || ||||| || |||||| |||| | || Sbjct 4802363 CCGCCCAGCATCTGCATGGTGCCGCCAACGTTAACCACAACTTCGGTGGTGTACTTCTCA 4802304 Query 11225 TGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAG 11284 ||| ||||| | ||| || ||||| | || ||||||||| || ||||| ||| Sbjct 4802303 ACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTGAGAG 4802244 Query 11285 CCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGC 11344 || || |||||||||| | || | ||| |||||| ||| || ||||| || |||||| Sbjct 4802243 CCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCGGTGC 4802184 Query 11345 CACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCC 11404 || || || ||| | | ||||||||||||||| |||| |||| || ||| Sbjct 4802183 CATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGTAGCC 4802124 Query 11405 AGACTGAGGGAGGTGACCGCCTTTCCGCC---CGGGGTAGATCTTGCGTCTGGATCCTGG 11461 ||| ||| | || || || ||||| ||| | | | | || || ||||| Sbjct 4802123 AGAGTGATGTTGGCAACGGC---ACCGCCATTCGGCATGTAGCGAACTTCCGGGTCCTGC 4802067 Query 11462 CCCAGATGGCCGACCAGGATTACCTTGTTCACTCC 11496 ||||||| ||||| | ||||| ||||| || || Sbjct 4802066 CCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 4802032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208483285190908