Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq122 86.0 8e-12 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||| ||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 3424697 CGCGGGATGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 3424756 Query 164884 TCCCACTCCCGCTCCCATTTCA 164905 ||| ||||||| ||| |||| Sbjct 3424757 TCCGGCTCCCGCAACCAATTCA 3424778 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||| ||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 3424842 CGCGGGATGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 3424901 Query 164884 TCCCACTCCCGCTCCCATTT 164903 ||| ||||||| ||| || Sbjct 3424902 TCCGGCTCCCGCAACCAATT 3424921 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||| ||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 3424962 CGCGGGATGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 3425021 Query 164884 TCCCACTCCCGCTCCCATTT 164903 ||| ||||||| ||| || Sbjct 3425022 TCCGGCTCCCGCAACCAATT 3425041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627918837955200