Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq4080 565 7e-157 seq122 127 6e-25 >seq4080 Length=6683 Score = 565 bits (626), Expect = 7e-157 Identities = 709/961 (74%), Gaps = 14/961 (1%) Strand=Plus/Minus Query 39441 CTTGGTGAGCATCGCTGTCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTG 39500 |||||||||||||||||| |||| | ||| || ||||||| |||||||| ||||| Sbjct 6683 CTTGGTGAGCATCGCTGTATGTTGGTCAAACTACCGTACAAAGACATCAACGAGTGCCTA 6624 Query 39501 ATGAACGGCGTCACTGAGGATGAAAT-CTGGCAGTACATCGGAACAGCGTCATAT-TTCG 39558 | | || | ||||| || | | || | |||| ||||| | | | || |||| Sbjct 6623 AAGGCTGGAATGACTGACGAGCAGGTACTTGATGTACT--GGAACGGGCTGAGATGTTCG 6566 Query 39559 ACCCGGAAGAGCTTTACAGCGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTTTACG 39618 |||| |||||||||||||||||| | ||||| || || |||||| | ||||||| |||| Sbjct 6565 ACCCCGAAGAGCTTTACAGCGCCAGAGAGTTCTACCAAGACACCGTTGATGCTTTCTACG 6506 Query 39619 GCAAGCAGCAGTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCC 39678 | || |||| || || || |||| ||| |||||| |||||| ||||| Sbjct 6505 GTCAGGAGCAATACCTATTCCCGACACCTTGGTCAACGCTAAACGGTAACTTCATGTTCC 6446 Query 39679 GTGAGGCGGAGTTAACGCTAGTCAATGGCGTGAACGGTCACGGGAAAACGGAGGTTGTCG 39738 | || || ||| |||| || ||||| || || |||||||||||||||||||| || || | Sbjct 6445 GCGAAGCAGAGCTAACACTGGTCAACGGGGTAAACGGTCACGGGAAAACGGAAGTGGTAG 6386 Query 39739 GGCATATGGCACTTGAGGCCATGAGGCAGGGGGTAAAAACATGCGTCGCATCGCTTGAAC 39798 | |||||| | ||||| || |||| ||| || || ||||| || ||||| || ||||| Sbjct 6385 GCCATATGACCCTTGAAGCGATGAAGCATGGCGTTAAAACCTGTGTCGCCTCACTTGAGT 6326 Query 39799 TGAAGCCCGGGGTTTTGCTTAAACGCCTGACCAGGCAGTCAACATGCTGCAAAACGCCAC 39858 | ||||| || ||||| || ||||| || | ||| | || ||| ||| |||| Sbjct 6325 TAAAGCCAGGCCAATTGCTCAAGCGCCTTACTCGTCAGGCTACCTGCGTTAAACTCCCAC 6266 Query 39859 C--AGTACTGGAAATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGG 39916 | || || ||||| |||||||| |||| ||||||||||||||| | ||||||||||| Sbjct 6265 CGAAGAAC--GAAATTGAATCAGCGTTTAGTTTTTACGATGACCGGTTATGGTTATTTGG 6208 Query 39917 CCTGACAGGTACAGCCAAGGCTGAACGCCTGATTGAAATTTTCACATACGCCAGACGGCG 39976 || || || || || || || || || || |||| || ||| ||||| ||| ||| Sbjct 6207 ACTAACGGGAACCGCTAAAGCCGACCGACTTCTTGAGATATTCGAGTACGCGAGAAAGCG 6148 Query 39977 ATACGGCATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGTATTGGCGATGACGA 40036 |||||| | ||||||||||||| |||||||| ||||| ||||| ||||| || || || Sbjct 6147 TTACGGCGTGAAGTTATTCATCATTGACAGCCTAATGAAATGCGGCATTGGTGACGATGA 6088 Query 40037 TTACAACGGGCAAAAGGCGTTTGTTGATTCGCTGTGCGACTTCAAGAATAAAACCAACTC 40096 ||||||| ||| ||||| ||||||||| | | || ||||||||||| ||| ||| Sbjct 6087 CTACAACGCGCAGAAGGCTTTTGTTGATGCTGTCTGTGACTTCAAGAACCGAACAAACAG 6028 Query 40097 TCACATTATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAA 40156 || | || ||||| |||||| | || || |||||||| ||||| ||||| ||||| Sbjct 6027 CCATGTAATACTCGTAACTCACAGTCGGAAAGGTGACAGCGAAGAGAAGCCTACTGGAAA 5968 Query 40157 GATGGACGTAAAAGGCTCAGGAGCGATTACAGACCTGACGGATAACCTGTTTATCATCTG 40216 ||||||||| |||||||| || ||||||| ||||| || || ||||||||||||||||| Sbjct 5967 GATGGACGTGAAAGGCTCTGGTTCGATTACTGACCTTACAGACAACCTGTTTATCATCTG 5908 Query 40217 GCGCAATAAAGCTCGCGAGAGAGCGCTACAGCGCGTTCAGGCTGGA--GAGCAGATTAAC 40274 ||| || ||||| || |||| || ||||| | | || | |||| | | | Sbjct 5907 GCGAAACAAAGCCCGTGAGAAGGCCATACAG-AAGCAAAACCTTAATGAAGCA-TTGACC 5850 Query 40275 GATAAAGACC-AGCAGCTTCTTGCTGCACCCGCATCTATTTTAATGCTGGAGAAGCAGCG 40333 || ||||||| | |||| || || || ||||| || | ||||| ||||| ||||| Sbjct 5849 GACAAAGACCAATCAGC-ACTCAGCGCTCCTGCATCCATGCTCATGCTAGAGAAACAGCG 5791 Query 40334 TAACGGGGAAGGATGGGAAGGTGGCGTACCGCTATTTCTTGATGAGCAGTCTCACCAGTT 40393 ||||||||||| |||||||||||| ||||||||| || ||||| | || ||||| || Sbjct 5790 CAACGGGGAAGGGTGGGAAGGTGGCATACCGCTATACCTAGATGACCCATCGCACCAATT 5731 Query 40394 C 40394 | Sbjct 5730 C 5730 >seq122 Length=4874392 Score = 127 bits (140), Expect = 6e-25 Identities = 240/351 (68%), Gaps = 14/351 (4%) Strand=Plus/Minus Query 32900 CCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTC 32959 || || ||||| |||||||| || | |||| ||| | |||||||| ||| || ||| Sbjct 4802363 CCGCCCAGCATCTGCATGGTGCCGCCAACGTTAACCACAACTTCGGTGGTGTAC---TTC 4802307 Query 32960 TGT---CCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 33016 | ||| ||||| |||||| | ||| ||| | |||||| | |||||||| | Sbjct 4802306 TCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTGA 4802247 Query 33017 GAGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGG 33076 |||||||| ||||| || || | ||| | ||| ||||| || ||| || ||| || ||| Sbjct 4802246 GAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCGG 4802187 Query 33077 TGCCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTA 33136 ||||| || || | ||| || ||||| || | || || ||||| ||| || ||| Sbjct 4802186 TGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGTA 4802127 Query 33137 GCTATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGT 33196 || | || | ||| || | || || || ||| | |||||||||||| || Sbjct 4802126 GCCAGAGTGATGTTGGCAACGGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCCTGC 4802067 Query 33197 CCAAC----CCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 || | ||||| || ||| || || |||||||||||||| ||||| Sbjct 4802066 CCCAGATTTCCGACTAA----AATTACTTTGTTTACGCCTCTGCTGGCCAT 4802020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149947247125172