Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq93 123 3e-23 seq45 114 2e-20 >seq93 Length=974399 Score = 123 bits (136), Expect = 3e-23 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || || | ||| |||||||| || |||| ||| || |||| Sbjct 914656 AAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATGGCAGCAAAGCTTCCA 914715 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 || |||||||| || || || |||||||||||||| | || ||| || | ||| Sbjct 914716 GAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTCAGCAAACGTGGCAGAC 914775 Query 33475 TCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 ||||| |||||||| ||||||||||||||||| || ||||| || | ||||| Sbjct 914776 TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTTCACACATGGGAGTGTTTCA 914835 Query 33532 ATGGCATTAAAGAGATA 33548 ||||||||||| | ||| Sbjct 914836 ATGGCATTAAATAAATA 914852 >seq45 Length=1811775 Score = 114 bits (126), Expect = 2e-20 Identities = 208/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 62775 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACT 62831 ||||||| |||||||| || | ||| || |||||||| || ||| || ||| | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 62832 TTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTT 62887 ||| | || || ||||| || | ||| || | | | | || | ||||||||||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCT-TCACAAACATGTT 849870 Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 | |||||| ||||||| ||||||||| || | || | | | ||| | | || Sbjct 849871 AACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAAT 849930 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849931 CTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTT 849990 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || ||||| || || | ||| | || || |||||||| | ||||| || ||||| || Sbjct 849991 GCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGC 850050 Score = 113 bits (124), Expect = 6e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 ||||| |||||| ||||||| || || | ||||| ||||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 63486 ATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | || | | ||| || || || || ||||| || || || || ||| | ||||| Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63595 || || || || || |||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 105 bits (116), Expect = 8e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 62073 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 62132 |||||||| || || || |||| | || || |||||||||||||| | |||||| Sbjct 848718 AAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTGA 848777 Query 62133 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 62192 |||||| |||||||| || || || |||||||||||||| | || || |||| |||| Sbjct 848778 GATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAATT 848837 Query 62193 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 62226 ||||||| ||||| || | ||| ||| || |||| Sbjct 848838 TCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || || ||||| || ||||| |||| ||||||||||| || || | || | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898431021080