Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq122 105 7e-18 >seq122 Length=4874392 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65588 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65647 ||||||| || || || || ||||| || ||||| || || || || || || || | Sbjct 3215637 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 3215696 Query 65648 ATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATT 65707 ||||| || |||||||| |||||||| || ||||| ||||| |||||||| || || | Sbjct 3215697 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 3215756 Query 65708 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 65767 | || |||||||| || | ||| || || || ||||| ||||||||||| || Sbjct 3215757 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 3215816 Query 65768 TTCAAC 65773 || || Sbjct 3215817 CTCCAC 3215822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 65598 TGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGT 65657 || ||||| || || ||||| || ||| | || || || ||| | | || || ||| Sbjct 1181318 TGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGT 1181377 Query 65658 ACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCA 65717 || |||||||| || || || ||||||| ||| ||||||||||| || | | || | Sbjct 1181378 ACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCG-- 1181435 Query 65718 TCTTCCAG-GGTATTT--CGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAA 65772 ||||||| | |||| |||| | || || |||||||| |||||||| ||||||| Sbjct 1181436 -CTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAA 1181492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553310279330040