Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq122 217 2e-51 seq83 201 1e-46 >seq122 Length=4874392 Score = 217 bits (240), Expect = 2e-51 Identities = 426/624 (68%), Gaps = 18/624 (3%) Strand=Plus/Plus Query 41787 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41846 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 2805867 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 2805926 Query 41847 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT-- 41904 | |||||| ||||||| | || || || | ||| | || || ||||| Sbjct 2805927 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 2805983 Query 41905 -GCGATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCG 41963 ||||| |||||||| |||| || || || |||||||| |||| || || | ||| || Sbjct 2805984 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 2806043 Query 41964 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTG 42023 || |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 2806044 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 2806103 Query 42024 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGC 42083 || || | ||||| ||||| || ||||| || || || ||||| || || ||||| || Sbjct 2806104 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 2806163 Query 42084 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 42143 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 2806164 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 2806223 Query 42144 CAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTT 42203 | || ||||| ||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 2806224 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 2806283 Query 42204 GATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGC 42260 ||||||| |||| | | || || | || || |||||||||| | |||| ||| Sbjct 2806284 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 2806342 Query 42261 AAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTA 42320 | || ||||||| || |||| || || |||||| |||||| || || || Sbjct 2806343 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 2806394 Query 42321 TACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAGCAGACTTATT 42380 |||| | || |||||| | | |||||| | ||| | || || | ||| | || Sbjct 2806395 CACCAAATACGAGAAAGACGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTT 2806454 Query 42381 CCAGTTGCTTGTTCAGGAACGCGC 42404 | | || | | ||||||||||| Sbjct 2806455 CTCGCTGATGATGCAGGAACGCGC 2806478 Score = 116 bits (128), Expect = 4e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 40686 CTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTG 40745 ||||||| | || ||| ||| | ||||||||||| ||||||||| | || ||| Sbjct 3442488 CTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTG 3442429 Query 40746 GATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAA 40805 ||| | ||||| || ||||| ||| |||||||||||| ||| |||| || Sbjct 3442428 GATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAG 3442369 Query 40806 CTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATC 40865 || || || ||||||||| || ||| ||||| | || |||||||||||||| Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 3442309 Query 40866 GCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGAT 40925 ||| ||||||| | ||| |||||| || || | |||| ||||| |||||| Sbjct 3442308 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 3442249 Query 40926 CTGGTTTGGACAGGTGGTGATGTCCATATCTACA 40959 | || ||||| ||||| ||| |||| | |||| Sbjct 3442248 TTTGTCTGGACCGGTGGCGATACCCATCTGTACA 3442215 Score = 107 bits (118), Expect = 2e-18 Identities = 231/342 (68%), Gaps = 5/342 (1%) Strand=Plus/Plus Query 155751 GCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGGTATTGTAGCGAAGCATTTCGCC 155810 |||||| || ||| || |||||| || ||||||| || || || || || || | |||| Sbjct 3819950 GCAAGGTGATCCCC-ACTCAGCGCGATCTGCTGGCCGGGATCGTCGCCAAACACTACGCC 3820008 Query 155811 CGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCATGACTCCGGCGACATCCACTAT 155870 ||| | ||||| || ||| || | || || ||||| |||||| ||||||||| Sbjct 3820009 CGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCCATGAGCGCGGCGAGATCCACTAT 3820068 Query 155871 CATGATCTGGATTACAGCCCGTTCACGCCATACACAAACTGCTGTCTGGTGGATTTGAAA 155930 || ||||| || ||| ||||| || |||||| ||| | || || Sbjct 3820069 CACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTAACTGCATGCTGATCGACCTGCGG 3820128 Query 155931 GGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCGAACCCCCGAAATCAATC 155990 || |||||| | | |||||||| ||||||||||| || |||||||| || || || ||| Sbjct 3820129 GGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCGAGATCGAACCGCCTAAGTCGATC 3820188 Query 155991 GGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTGCTTCTCACCAGTACGGC 156050 || || || | | || ||||||| ||| ||| | || || ||||| Sbjct 3820189 TCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCCAGGTCGCCAGCCATATTTACGGG 3820248 Query 156051 GGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGCTCCGT 156090 || || ||| || || || | ||| |||||||||| |||| Sbjct 3820249 GGCACCACCATT--AACCGTATTGATGAAGTGCTGGCGCCGT 3820288 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 43594 GAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATG 43653 ||||| || || || ||||||||||| |||||||||||||| | ||| ||| ||||| Sbjct 2807759 GAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGTATT 2807818 Query 43654 CAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAA 43713 | ||| |||| || ||||| ||| ||| ||| |||||| | ||||| Sbjct 2807819 GACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTATCAG 2807878 Query 43714 ACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCT 43773 || ||| | || | ||||||||||| |||| ||| ||||||| || ||| | ||| Sbjct 2807879 ACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATCTC- 2807937 Query 43774 GATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 43812 ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 2807938 GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 2807977 >seq83 Length=912621 Score = 201 bits (222), Expect = 1e-46 Identities = 301/426 (71%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 41794 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41853 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 579776 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 579835 Query 41854 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41910 || | || || | || ||| | | ||| | || || || ||| || ||| Sbjct 579836 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 579892 Query 41911 GTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 41970 || || || ||||||||||||| || |||||| | |||||||| | ||||| || | Sbjct 579893 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 579952 Query 41971 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 42030 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 579953 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 580012 Query 42031 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 42090 | ||||| || || ||||| || || ||||| ||||| || || ||||| || || || Sbjct 580013 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 580072 Query 42091 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 42150 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 580073 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 580132 Query 42151 GTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 42210 ||||| ||||||| | |||||||| ||||| ||||| || | ||| | | |||||| Sbjct 580133 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 580192 Query 42211 AAGCGT 42216 | ||| Sbjct 580193 CAACGT 580198 Score = 116 bits (128), Expect = 4e-21 Identities = 295/441 (67%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 42958 GATTGGGAATGGTTGCGCGGCGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCC 43017 ||||||||| | || || | |||||||| | | ||||||| ||||||||||| ||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 43018 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACCG 43077 || || ||||||| || | ||| || | || | |||||||| || || || Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 43078 CCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAAC--CAGGTAGTAC 43135 || ||||| ||| ||| | ||| | |||||||| ||| ||| || ||||| || | Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 581129 Query 43136 C-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 43194 | || || || | | | ||| ||||| || ||| |||| | | Sbjct 581130 CAGAGTATGAGCGCTTACA-AGATCAGTATGAGCTGCTATGGGAAATG------CCTTCT 581182 Query 43195 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 43254 || | ||||| | | ||| | |||||||||||||||| || ||||| |||||| Sbjct 581183 AACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCTCT 581242 Query 43255 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 43314 ||||||||||||| |||||| | | | | | || ||||| | || | | | Sbjct 581243 TCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGT-ACCGATGCAGCAGTT 581301 Query 43315 ATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACAC 43373 | || | |||||||| ||| | | | |||||||||||| || || ||||| ||||| Sbjct 581302 ACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAACAC 581361 Query 43374 CCGCGACGGTGCAGGTGAAGA 43394 || || ||||| |||||| Sbjct 581362 GCGTGATGGTGC---TGAAGA 581379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577426791160800