Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq122 403 4e-108 >seq122 Length=4874392 Score = 403 bits (446), Expect = 4e-108 Identities = 786/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 25256 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 25315 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 200919 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 200860 Query 25316 GTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 25373 || |||||||| ||||| ||| |||||||| || | || ||| || || | Sbjct 200859 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 200800 Query 25374 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 25433 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 200799 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 200742 Query 25434 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 25493 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 200741 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 200682 Query 25494 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 25553 | ||| ||||| ||||| || | ||| || |||||| || | ||| |||||||| | Sbjct 200681 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGTAGTTTT 200622 Query 25554 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 25610 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 200621 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 200562 Query 25611 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 25670 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 200561 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 200505 Query 25671 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 25730 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 200504 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 200445 Query 25731 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 25790 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 200444 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 200389 Query 25791 CCGGCGCCGGGAT-GACAG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 25846 | |||| || || | ||| ||| || | | ||| | || |||| ||| |||| Sbjct 200388 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 200329 Query 25847 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCC 25906 |||||||||||||| | ||||| |||| ||| | | ||| ||| | || || | Sbjct 200328 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 200271 Query 25907 TT--CGTTTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 25964 || |||||| |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 200270 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 200211 Query 25965 CCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCT 26024 |||| ||||||| ||||| | ||| ||| || || ||| | ||||||| ||||||| Sbjct 200210 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 200151 Query 26025 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 26084 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 200150 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 200091 Query 26085 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 26143 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 200090 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 200032 Query 26144 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 26202 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 200031 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 199973 Query 26203 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGT 26262 |||||| | ||||| || || | |||||| |||| || | |||||| ||||| Sbjct 199972 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 199913 Query 26263 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 26322 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 199912 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 199853 Query 26323 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 26382 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 199852 AGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 199793 Query 26383 GTGGTAAT 26390 ||| |||| Sbjct 199792 GTGATAAT 199785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120314251187606