Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq45 105 2e-17 seq4 86.0 2e-11 >seq45 Length=1811775 Score = 105 bits (116), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| || | ||||| ||||| || || || || | || || || ||||| || ||| Sbjct 850068 GCTCAGCAGTTGTGGTTGGCCATTATTGAGTCTCAAGTAGAAACTGGCACACCTTACATG 850009 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||||| | ||||||||||| ||||| |||||| | | || |||||| | Sbjct 850008 TTGTACAAAGATGCTTGCAACCGCAAATCCAATCAGCAGAATGTAGGAACAATTAAAAGC 849949 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC-GAGACTGCCGTATGTAA 364289 ||||| || || || |||||| |||| || || | ||||| || | ||| || ||||| Sbjct 849948 AGCAATCTTTGCACTGAGATTGTTGAGTATTCCTC-GCCGACAGAAATTGCTGTTTGTAA 849890 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| || || ||||| || ||| || || || || | |||||||| || | Sbjct 850719 TTGCTTCCTGCTGTCTATGAAAGATGATAGTATTGAAGGCATTTACGACACACTGAAAGA 850660 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | ||||| ||| || || || |||||||| || ||| | ||||||| Sbjct 850659 CTGTGCTTTGATTTCTAAGTCAGCTGGAGGTATTGGTGTTAACATTCACTGTATTCGTGC 850600 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 || ||||| ||| ||||| || ||| || ||||| | |||||||||||| Sbjct 850599 CAAGGGAAGTTATATTGCTGGCACTAATGG-TACATCAAATGGTATTATTCCCATGCTTC 850541 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 |||||| |||| || || | ||||| ||||| |||||| Sbjct 850540 GTGTGTACAACAACACAGCTAAATACGTAGACCAAGGTGGA 850500 >seq4 Length=4567600 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 |||||||| |||||||| ||||| || |||||||| | |||||| || ||| || Sbjct 988611 GAAGAACTCCTGTGGTTCATTCGAGGTTCAACAAATGCCAGAGAACTTCAAGAAAAGAAA 988670 Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479 || || ||||||||||||||| | ||| | | ||| |||| || | || || |||| Sbjct 988671 GTTAACATTTGGGATGGAAATAGTTCAAGACAGTTTTTAGACTCTATGGGATTTACCGAC 988730 Query 111480 AACGAAGAAGGT 111491 | ||||||||| Sbjct 988731 AGAGAAGAAGGT 988742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303249012797666