Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq122 441 2e-119 >seq122 Length=4874392 Score = 441 bits (488), Expect = 2e-119 Identities = 736/1050 (70%), Gaps = 18/1050 (2%) Strand=Plus/Plus Query 43235 CCCAATAAG-TCGTCAAGGCCGCCGCCATCGATACCAGCGGCGATCACCTCACATTGTTC 43293 ||||| || |||||||| ||||||||||| || ||| ||| ||| ||||| || | | Sbjct 2964014 CCCAAGCAGATCGTCAAGACCGCCGCCATCAATGCCAACGGTGATGACCTCGCACCGCGC 2964073 Query 43294 GATCAGGT-CGAGAAGCGTCACG--CGCTCCGGCAACCCTGCATTGATCCAGAAGTCTGC 43350 | | | | |||| || || || |||| ||||| |||||| || || Sbjct 2964074 CAGAATCTGCTTGAAG-GTTACTGACGGGTCGGC----CTGCACCTC-CCAGAACTCCGC 2964127 Query 43351 GCCGGCCCACCGGTCGGACCGGAGGTTCATGCCGATCTCGACGTTGAGGTGCTTCGCGAT 43410 |||||||| |||||| || || |||||||||||||| ||||| || ||||| || | Sbjct 2964128 ACCGGCCCAGCGGTCGTTGCGAAGATTCATGCCGATCTCTACGTTCAGATGCTTGGCAAG 2964187 Query 43411 GAACTGCTGGAACGATCCGTCAGTCTTGGTGCG-GATCTTGTTGAGCTGGTCCTCCAGCC 43469 |||| | | || ||| |||| |||| | ||| | | || ||||||| Sbjct 2964188 AAACTTGCGCAGACTGCCTTCA-TCTTCTTGCGAGCGCTTCAGGTATTCATCATCCAGCC 2964246 Query 43470 ATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGATCGA 43529 | || |||||| || || || | ||| || || || ||||| | || | || | Sbjct 2964247 ACTCTTTACTGACGGAGCGACCCATATTTGGGTTGGTAATGTAAAAATTATCAGGGTTTC 2964306 Query 43530 GGTAGGCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGCCGAGCGACTTCC 43589 || | | | || ||||| || ||| |||||||| || | |||||||| || | Sbjct 2964307 GGAACCCGTCGTTCTCAACCATATCCGGCGGGAACTCGTAAAGGATGCCGAGCGTTTTAC 2964366 Query 43590 GGTCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACTTCTCTTTGAACACAC 43649 ||| || ||||| || |||| ||| |||| | || |||| |||||| || | Sbjct 2964367 CGTCCTTAATCACTCCGTCCCGGACGTTGCGCCAGTAATCCAGTTTCTTTTTGAATACGC 2964426 Query 43650 CGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACCCTTCATCCCGCGACA 43709 | || || || || ||||| |||||||| ||| ||| ||||| || ||||| ||||| | Sbjct 2964427 CTGCAGGTGGTTCATCGCTCTGCGTTGTGAGGTAGATAACCCATCCCTCATCGCGCGATA 2964486 Query 43710 CCTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCC 43769 |||| || || ||||| |||||||| || || || || || | || ||||| | || Sbjct 2964487 CCTGCCCACCCAGTGCCTCAATGAACATTGCATCGGCTTTGGCGTTTTTACCGAAAAGCC 2964546 Query 43770 AGTGCTCGTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCGTGTCAGTGTCGGCCG 43829 | |||| |||| || || || | || || ||||||||||| || |||| || | Sbjct 2964547 ATAGCTCCTCGACCAGTATGCGACCCGCTTTTTTACCCGATACCGTATCGCTGTCCGCGG 2964606 Query 43830 CAACCACCTTCAACGACGCT--CGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTTG 43887 | ||||||||||| || | || ||||||| || ||||||||||||||||| || || Sbjct 2964607 CCACCACCTTCAA--ACTGTTGCGGTTGACGCGATGGGTTATCGTGCGGATGTGGTCCTG 2964664 Query 43888 GACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGTTTGAA 43947 |||||||||||| | || |||||| | || | || | ||| | ||||| || ||||| Sbjct 2964665 TACATGAAACAGCGCTGAAAGCTCTTCGTCTTCACGCACCATGCTGGCCGCTGGCTTGAA 2964724 Query 43948 GCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCCA 44007 || ||| || || ||||| || || || || ||||||| |||||| || || ||||||| Sbjct 2964725 GCAGTTATCGGCAACCTCTTTGGTTGGTGCCAGAATCAAGTGCTCCTCGTCAGCGCGCCA 2964784 Query 44008 ACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCTT 44067 || | ||| | ||||||||||| || ||||| || || |||||||| || |||||||| Sbjct 2964785 GCAGATAATCAGGGCCGTCAGCATAATCCCGGCAGCAATTGTCGATTTGGTGTTCTTCTT 2964844 Query 44068 GCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAGGCACC 44127 ||| |||||||| | | |||||||| || || || || || | || ||| | || Sbjct 2964845 GCTTATCAGCAGGCCGTATTCGCGGATAAGCTGTTTTCCCGTCTGCTGGTCATAGCCGCC 2964904 Query 44128 GAAAATGGCCGCGACGAAATCGAAGACCCACTGCTCGCTGCATTCGCCGAAGGTCGGCTT 44187 ||||| ||| |||||||| || ||||||||||| ||| || ||||| || ||||| Sbjct 2964905 AAAAATTGCCAGCACGAAATCAAATACCCACTGCTCTGAGCACTCCCCGAAAGTGGGCTT 2964964 Query 44188 TCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCGCGACTGCCTGCTCAGCCTG-AT 44246 || || ||||| ||| || || ||||| || | || || |||| ||| | || Sbjct 2964965 GCCAGGCAGGTCTGTAACCTTTAGCTCTTTGAATATGGAGAGAGCATGCT-GGCCGGAAT 2965023 Query 44247 CCGGGAAAATCGGCGGCGGAATGATCGACT 44276 | | |||||| |||||||| ||||| |||| Sbjct 2965024 CTGTGAAAATAGGCGGCGGGATGATTGACT 2965053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143406933584908