Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007709.1 Length=43785 Score E Sequences producing significant alignments: (Bits) Value seq122 87.8 5e-13 >seq122 Length=4874392 Score = 87.8 bits (96), Expect = 5e-13 Identities = 184/266 (69%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 1829 TTTCTGGCAAAGCACGCCAATATCGAGATAGGCATGAACCTCCGAAACGACCGCTTTGCC 1888 ||||| || ||||| || | ||||| |||||||| || || |||||||||| ||| Sbjct 2964190 TTTCTTGCCAAGCATCTGAACGTAGAGATCGGCATGAATCTTCGCAACGACCGCTGGGCC 2964131 Query 1889 GGTAGCGACTTCTGGCAGCAGAATTCAGATCCAACTCTCAACCTAGACAGCCTGATT--- 1945 ||| || |||||| || | | | || || | | ||||| | ||| |||| Sbjct 2964130 GGTGCGGAGTTCTGGGAGGTGCAGGCCGACCCGTCAGT-AACCTTCA-AGCA-GATTCTG 2964074 Query 1946 GAGCGCTGTGAGGTAGCCGTAGTCGGCATCGACGGCGGCGGTCTTGACGACTTGCTGGGG 2005 | ||| || ||||| | || ||||| || ||||||||||||||||| |||| ||| Sbjct 2964073 GCGCGGTGCGAGGTCATCACCGTTGGCATTGATGGCGGCGGTCTTGACGATCTGCTTGGG 2964014 Query 2006 CTGT-CAGTGGTGGGC-AGATGCAAGAAAACGCGAAAGTGGCTCAGCTGGAGCTATGGAT 2063 || | || || |||| ||| | ||||| || | ||||||| |||| | ||| | Sbjct 2964013 CTATCCATTGCCGGGCGTGAT--AGCAAAACCCGCGACTGGCTCACCTGGTCCCATGCCT 2963956 Query 2064 GGTGCCACAGCATCGCGCTGGAGCGG 2089 |||| ||| | |||||||||||| Sbjct 2963955 GGTGTCACGTTAAGGCGCTGGAGCGG 2963930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139979988476482