Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq43 131 2e-25 seq3962 116 3e-21 seq275 100 3e-16 seq45 86.0 6e-12 seq19 86.0 6e-12 seq93 82.4 7e-11 >seq43 Length=2082672 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||||||||| || | ||||| || |||||||| || || ||||| || | Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| ||||||||||| || || ||| Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | ||| | || ||| | || || | Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || || || || || |||||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 >seq3962 Length=6517 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||| || || || || |||||||| || | Sbjct 413 CCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 354 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || |||||||| ||| |||| | |||||||| || || ||| Sbjct 353 AAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGG 294 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||||| | ||| | | ||| | || ||| | Sbjct 293 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACC 234 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || |||||||||||||| Sbjct 233 TCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 131045 CCTTT-TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| |||||||| || || | ||| || ||||| ||||||||||| || || Sbjct 6289 CCTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 6230 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||||||||| || || || || || ||||| |||||| ||| | | | Sbjct 6229 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTC 6170 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | | || | || ||| | || | || | ||| || ||||| ||||| || || Sbjct 6169 TCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACA 6110 Query 131224 AAAATCTGCAT 131234 ||||||||||| Sbjct 6109 AAAATCTGCAT 6099 >seq275 Length=398669 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 |||||||||||||| || || |||||| ||||| |||||||| || || | || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTC 131165 | |||||||||||| || ||||||||||| ||||| ||| ||| || |||| | ||| Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACGTTCTC 170605 Query 131166 CACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 | || || | || || | || | ||| | ||||| || || || ||||| || || Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 131226 AATCTGCAT 131234 |||||||| Sbjct 170544 GATCTGCAT 170536 >seq45 Length=1811775 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 145619 TTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTC-CTCGGCGTCGCTGTATTGTAC 145677 || ||||| | || |||||||||||||| || | || |||||| | || | || Sbjct 849869 TTAACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCG-AGGAATACTCAAC 849927 Query 145678 GATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCT 145737 ||||| | ||| | |||||| | ||| || ||||| | ||| |||||||| ||| | Sbjct 849928 AATCTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCG 849987 Query 145738 GTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTC 145791 |||||| || || ||||| | |||||| ||| |||||| || || || | ||| Sbjct 849988 GTTGCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTC 850041 >seq19 Length=2947477 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 131045 CCTTT-TGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 ||||| ||||| ||||| || || || | || | || || ||||||||||| ||| | Sbjct 340558 CCTTTCTGAATATTGTAGTCAGACAATGTCCTGCCA-TCTTCAAGCTGCTTGCCAGCGAA 340616 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||| || ||||| ||||| ||||| || || ||| | | Sbjct 340617 GATGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATT 340676 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 ||| | | ||| | || ||||| || | || | ||| || || || || || || || Sbjct 340677 CTCAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGAC 340736 Query 131223 GAAAATCTGCATG 131235 ||| ||||||||| Sbjct 340737 GAAGATCTGCATG 340749 >seq93 Length=974399 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 46067 TTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGA 46126 ||||||| ||||| | || || ||| ||||| |||| ||||| |||||||||| Sbjct 914845 TTAATGCCATTGAAACACTCCCATGTGTGAAGAAGAAGGCCGATTGGGCCATGAAGTGGA 914786 Query 46127 -TCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGC 46185 | || || | || || || || ||||| | | |||||||| ||||||||| Sbjct 914785 TTGCTCATGAG-TCTGCCACGTTTGCTGAGCGAGTAATTGCCTTTGCTGCTGTGGAGGGT 914727 Query 46186 GTCtttttttCTGGCAGTTTTGCCGCCATCTT-TTACATCAAAACCAAGGGCATCATGCC 46244 |||| || ||||| || ||||| ||||| || | | | | || ||||| | ||||| Sbjct 914726 ATCTTCTTCTCTGGAAGCTTTGCTGCCATTTTCTGGCTTAAGAAGAGAGGGC-TTATGCC 914668 Query 46245 CGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGG 46285 || || || || ||||| ||| |||| || || || |||| Sbjct 914667 AGGTCTTACCTTCAGCAATGAGTTGATTTCACGAGATGAGG 914627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471975847297920