Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq871 136 3e-27 seq385 136 3e-27 seq1582 118 7e-22 seq36 116 2e-21 seq898 113 3e-20 seq43 104 2e-17 >seq871 Length=10861 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5346 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5287 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 5286 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 5252 >seq385 Length=166179 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 166175 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 166116 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 166115 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 166081 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| | | |||||||||||||||||||||||| || |||||||| Sbjct 136658 AAGTCCGTTCCCTTGCCAGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 136599 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 136598 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 136564 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 164193 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 164134 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 164133 CCCAATATTTAGCTTTA 164117 >seq1582 Length=19937 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| | | |||||||||||||||||||||||| || |||||||| Sbjct 10637 AAGTCCGTTCCCTTGCCAGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10578 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 10577 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 10543 >seq36 Length=2530450 Score = 116 bits (128), Expect = 2e-21 Identities = 199/285 (70%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || |||||||| || || || | || || || || | |||||| |||||| | Sbjct 2102599 ACCCCACAAAATATTTTGGCTGTGAGTTGGGTGCGCAAACCAACTTTGATTTCAAAAATG 2102540 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | ||| || || || || ||| | ||| ||| |||| || | ||||| || | Sbjct 2102539 ATCGTTACATTGTCAATGGGTCCCATGATGCTGTTAAGTTGCAAGATCTCCTTGATGGTT 2102480 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGT 6498 ||||||| || |||||| |||| | |||| || || || ||||||| | | ||| | Sbjct 2102479 TTATTCGGAAATTTGTGTTGTGCCCACAATGTGACAATCCTGAGACCGTTTTGAGTGT-T 2102421 Query 6499 CTACCAAGAGAAA--CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCT 6556 | | ||| |||| || ||| |||||||||||||| || || |||||||| | || Sbjct 2102420 CAAGCAA-AGAAGGGCATTATCAGCCAGGGCTGCAAAGCTTGTGGCTACCATGGAACTCT 2102362 Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || || || || ||||| | ||| |||| ||||| || Sbjct 2102361 TGACTTCAATCATAAGCTAAACACTTACATTTTGAAAAATCCCCC 2102317 Score = 114 bits (126), Expect = 9e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||||| ||| || || || || || || || ||||| |||||| ||| Sbjct 2103515 AACGTGAATCGCGCCGTGAGCGATGCCTTTTATCGGTATAAGATGCCTCGCATCCAGGCC 2103456 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || || ||||| ||||| || || ||||| ||||||||||||||| |||| |||||| Sbjct 2103455 AAAGTAGAAGGTAAAGGAAATGGCATAAAAACTGTCATTGTCAACATGGCTGATGTCGCT 2103396 Query 6294 AAGGCGCTCGGACGCCCTGCCAC 6316 ||||| || ||||||||||| || Sbjct 2103395 AAGGCTCTTGGACGCCCTGCTAC 2103373 >seq898 Length=41579 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 30517 CTCTGTCTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTGTGCTATCGGTCTCGT 30458 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 30457 GGTCATATTTAGCCTTA 30441 >seq43 Length=2082672 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| || | ||| | |||| |||||| || |||||||| |||||| Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | || || || ||||| || | || || ||||| | |||| Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||| ||| || |||| | || ||| ||||||| Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || || | || || || || |||||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | || | ||| || ||| ||||| ||||||||||| | Sbjct 901076 CATT-CCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGT 901018 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| ||| | || || | || || |||||||| || | | || || || | Sbjct 901017 CAGACAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTG 900958 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| ||||| ||| || || ||| || |||| || | ||| | Sbjct 900957 GGGGGATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCT 900898 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || || || || |||| ||| |||||||| |||||||| Sbjct 900897 CAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334921633375553