Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq45 122 1e-22 seq93 113 6e-20 >seq45 Length=1811775 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 |||||||| ||||||||||| || || | ||||| ||||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 63341 ATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | || | | ||| || || || || ||||| || || || || ||| | || || Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450 || ||||| || ||||||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 111 bits (122), Expect = 2e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 61928 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 61987 |||||||| || || || |||| | || || |||||||||||||| | |||||| Sbjct 848718 AAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTGA 848777 Query 61988 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATT 62047 |||||| |||||||| || || || |||||||||||||||| || || |||| |||| Sbjct 848778 GATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAATT 848837 Query 62048 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 62081 ||||||| ||||| || | ||| ||| || |||| Sbjct 848838 TCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 109 bits (120), Expect = 7e-19 Identities = 207/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 62630 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACT 62686 ||||||| |||||||| || | ||| || |||||||| || ||| || ||| | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 62687 TTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTT 62742 ||| | || || ||||| || | ||| || | | | | || | ||||||||||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCT-TCACAAACATGTT 849870 Query 62743 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62802 | ||||| ||||||| ||||||||| || | || | | | ||| | | || Sbjct 849871 AACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAAT 849930 Query 62803 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 ||||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849931 CTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTT 849990 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 || ||||| || || | ||| | || || |||||||| | ||||| || ||||| || Sbjct 849991 GCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGC 850050 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || || || ||||| || ||||| |||| ||||||||||| || || | || | | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATaaa 62311 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || || | ||| ||||| ||| | ||| | || | || || ||||||||||| || Sbjct 850792 CTTGAAAGTTGAGGACGAGGAGTAGCAGCACTGAACAGAGTGGGTGAAGCGTGAGTGAAA 850851 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | ||||| ||||| ||||| || ||||| || | || ||||| |||||| Sbjct 850852 TATCTCTCAGACAGTAGGTTGTAAGTTTCAATGGCAGCATCAATATCATCCCCATGAATA 850911 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || || || | ||| |||||||| ||||| | |||||| | ||| | || || Sbjct 850912 CCAACAGCAACCCTCATCAACATGTGTTGAGGACGTTCAACAACCTTACCGCCAATCTT- 850970 Query 63626 AACAAG-TAGGATTTTTCCAAAGTTTTAAA 63654 || ||| || ||| |||||||||| | ||| Sbjct 850971 AAGAAGATATGATCTTTCCAAAGTCTGAAA 851000 >seq93 Length=974399 Score = 113 bits (124), Expect = 6e-20 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| ||| || || ||| || || || || ||||| || || | ||| | Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 ||||||| || |||| ||||| |||||| ||||| || || || || || ||||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 32859 |||| | || ||| || | ||| ||||| |||||||| |||||||||| Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||| || ||||| || | ||| || || |||||||| | ||| Sbjct 914807 CCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATA 914852 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/138 (74%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 32316 TAAAAGTCAACATCTAGAGAAAAATGATTGTC----TTCTTGAGACATAACTCCCATTTT 32371 ||||||||| |||||| || ||| ||| || || || || ||| |||||| || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATT-AGCCATCACTCCCCACTT 914149 Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 || |||||||| || ||||| || |||||||| || ||||||||||| || | || Sbjct 914150 CTGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTC 914209 Query 32432 CATGAAATCGAATGGATT 32449 |||||| || ||||| || Sbjct 914210 CATGAAGTCAAATGGGTT 914227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633582394534800