Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq43 100 2e-16 >seq43 Length=2082672 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || |||| || | ||||| || | || Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| ||| | ||| |||||| ||||||||||| || || || || || Sbjct 901133 TGATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCA 901192 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || | ||||||| |||||| || || ||||| Sbjct 901193 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAA 901252 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 ||| || || || ||||| ||||| Sbjct 901253 TATCCAGAAGGAGTCCACTTTACAT 901277 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | || Sbjct 900846 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 900905 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | |||||| | ||| || ||| || ||||| || || || || ||||| Sbjct 900906 GATTCCATCGAGAACGTCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAG 900965 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || |||||||| || || | ||||||| || ||| || || |||||| Sbjct 900966 CAGAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACTACAAT 901025 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || ||| | || || Sbjct 901026 ATTCAGAAGGAATCCACCCTCCATCTTGTCCT 901057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433294923938345