Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq122 733 0.0 seq1959 107 7e-19 >seq122 Length=4874392 Score = 733 bits (812), Expect = 0.0 Identities = 972/1345 (72%), Gaps = 23/1345 (2%) Strand=Plus/Minus Query 37270 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAATACATTATAAACTTGTGTACAG 37329 || |||||||||| | |||||||| ||||||||||||||| ||| | |||||||||| Sbjct 2987981 TTCGTTCACTTGCCATTGCGTACACATTGAGTACAGAATAGATTTCAGTGTTGTGTACAG 2987922 Query 37330 GATA-TAAAGCATTGGCACTGAGCGACACCAAACTACGAGGCCTCTACGGAAAACCCTAC 37388 |||| |||| | |||| || ||||| || || || || || | |||||||| | ||| Sbjct 2987921 GATACTAAA--AGTGGCTCTCAGCGATACAAAGCTTCGCAGCATAAACGGAAAATCATAC 2987864 Query 37389 TCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGGA 37448 |||||||| ||||| | |||||||| |||||||||||||| || || || ||| | || Sbjct 2987863 TCTGGCCCACCTGAAGTGACCGATGGGGACGGGTTAAGTGTCCGCATAACGCCAACTGGG 2987804 Query 37449 ACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGGG 37508 || || || || ||||| || || ||||||||||| | || || || | || || || Sbjct 2987803 ACCATAACCTTCCAGTATCGATACCGCTGGAATGGAAGCCCCGTTCGCATAACCGTTGGC 2987744 Query 37509 CGCTATCCGTCTACTTCACTGAAGGACGCGCGTGTTATCGTCGGTGAGATGCGCGCATTG 37568 ||||| || |||||||| || ||||| || || | ||| || ||||||||||||||| Sbjct 2987743 CGCTACCCCTCTACTTCGCTAAAGGATGCCCGGATCGCCGTTGGCGAGATGCGCGCATTG 2987684 Query 37569 TACATGAAGGGAGTTAACCCTAAAAATTATTTTGCGCCCAGTGACGGCGAACTGACATTA 37628 |||| |||||| || ||||| |||| |||||||| ||| || ||| |||| | Sbjct 2987683 TACACGAAGGGGGTAAACCCAAAAACCTATTTTGCCAGCAGCTCGGGTGAATTGACTCTT 2987624 Query 37629 AAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTACTGATCTGAAACCCAATACACAG 37688 | ||||||| || ||||||||||| |||||||| || | |||||| ||||| | Sbjct 2987623 CAGCAATGCCTCGACCAGTGGTGGGAAAAGTATGTGACCGGGCTGAAAGAGAATACCCGC 2987564 Query 37689 ACGCTTTACAGATCCGTCGTGTACAACACTATGTACACACAGTT---TGAAGGCTCGCCA 37745 | || |||| || |||||||||||||| ||||||||||| || || | | || Sbjct 2987563 ATCCTGTACAAGTCAGTCGTGTACAACACCATGTACACACAATTCCGCGATGTC---CCG 2987507 Query 37746 GTTGCCAGTATCCCAGTATCGGCATGGGCTCGTTTCTTTGACAAACAAGAAAGCCTCAAC 37805 || || || | |||||||| |||| | ||||| || || || || |||| || Sbjct 2987506 GTCGCTAGCGTACCAGTATCCCTGTGGGTCCAGTTCTTCGATAAGCAGGAGAGCCAGAAT 2987447 Query 37806 AAGAAAAAGGCTCGTGTTTTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGC 37865 ||||| || || | || | || | || |||||||| || || |||||||| |||||| Sbjct 2987446 AAGAAGAAAGCGAGAGTGCTTCTGCTGCAGCTGCGTTCTGTAATGAACTGGTGCATCAGC 2987387 Query 37866 CGCCAGTTAATCCCATCATGCGAATTACTCAAGCTTAGTGTTAAGAATATTGGGAAAAAA 37925 || ||| | || |||||||| ||| | |||| || || ||||| |||||||| || || Sbjct 2987386 CGGCAGCTCATTCCATCATGTGAAGTCATCAAACTCAGCGTTAAAAATATTGGCAAGAAG 2987327 Query 37926 CCAGATGTAGGGAGTCGTGTACTTACCTATACGGAACTGGCAAAAATTTGGCTGGCGCTG 37985 |||||||| || || || | || || || || ||||| ||| | |||||||||||| Sbjct 2987326 CCAGATGTTGGCGTGCGCGTGTTGACTTACACAGAGCTGGCGAAAGTGTGGCTGGCGCTG 2987267 Query 37986 GAGAACTCAAAAGTAGTTACTTCCAACAAGGTGTTACATCAATTGCTATTGCTATGGGGG 38045 || || || || || | || |||||| || | ||||| |||| |||| ||||| Sbjct 2987266 GAAAATAACAAGGTGTTTTCATCTAACAAGCTGCTGCATCAGATGCTGCTGCTGTGGGGA 2987207 Query 38046 GCCAGACTTTCTGAGCTACGTCTCGCGACAGCCAGTGAGTTCAACATGGAAGATTTGGTC 38105 |||||| | || || || || ||| | || | ||||||||||| ||||| || | Sbjct 2987206 GCCAGATTGTCAGAACTTCGGCTCTCAACCCCTGCTGAGTTCAACACTGAAGACTTCATA 2987147 Query 38106 TGGACAACCCCAAAAGAGCATTCAAAAATGGGGAATATTATCCGGCGTCCGGTATTCACT 38165 ||||| || || | ||||| || ||||||||| ||||||| || || |||| Sbjct 2987146 TGGACTACACCTGTCGCCCATTCGAAGATGGGGAATGTTATCCGCCGCCCTATATTTGAG 2987087 Query 38166 CAGGTTAAACCTTATATCGAGAGATTGCTTAATGCGGGTTTTGA-------TGTGCTATT 38218 ||| | || || ||| | || || ||| |||| ||| || | || Sbjct 2987086 CAGATGAAGCCATATGTTGAAAG---GCTACTTGCG----ATGAAAACCCCGGTAATGTT 2987034 Query 38219 CCCCGGGCAGGAAATAGATAAACCTATTGATCGTTCGTCGGCTAATTTGTACATGAAAAA 38278 |||||| |||||| | || ||| | || || || || || || ||| ||||||||||||| Sbjct 2987033 CCCCGGACAGGAACTGGACAAAGCGATCGACCGATCCTCCGCAAATCTGTACATGAAAAA 2986974 Query 38279 GTTAAGGGAGAAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCTCTGGT 38338 | | ||| || ||||| || |||||| | || |||||||| ||||| || ||||| Sbjct 2986973 CCTGCGCACGAAGATAGATATCCCCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGT 2986914 Query 38339 AACGAATTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGA 38398 || || ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 2986913 TACCAACTTATCAGGCGAAGGTATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGA 2986854 Query 38399 ACTTGGGGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGC 38458 || || || || ||||| || ||||| ||||| |||||| | ||| ||| | || Sbjct 2986853 GCTGGGCGGGGTAATGGCGGTTTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGC 2986794 Query 38459 GTATGAGTTGTATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAATTCCTCCG 38518 |||||| | || ||||||||| | | ||||||| |||||||||||||| | || || Sbjct 2986793 CTATGAGCTTTACGCTGATAAAGTCCTGTGGCACGTTAAACAGCTCGGTTGACACCGCCA 2986734 Query 38519 GCTTTAAGCCATTGTTCAACGGCCTGACGACTATATCGCGCCGGATGAGTAAGTACTGGT 38578 | | | ||| | || ||| ||| || || |||||||| || |||||||| || || Sbjct 2986733 TCATCTACCCACTTTTTAACAGCCCTGCGGCTGTATCGCGCAGGGTGAGTAAGAACAGGG 2986674 Query 38579 TCCGGGAATCCGTGtttttttCGCA 38603 | ||||| ||||| || ||||||| Sbjct 2986673 GCAGGGAAGCCGTGGTTCTTTCGCA 2986649 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 59881 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 59937 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 59938 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 59975 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 >seq1959 Length=43063 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 59896 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 59955 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 59956 TCCAGCAAGGGCCACCA 59972 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192625672761200