Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq93 161 1e-34 seq4657 123 3e-23 seq141 122 1e-22 seq13 116 4e-21 seq1 116 4e-21 seq169 114 1e-20 seq67 113 5e-20 seq571 95.1 1e-14 seq506 95.1 1e-14 seq133 95.1 1e-14 seq104 95.1 1e-14 seq132 91.5 2e-13 seq84 82.4 9e-11 seq75 82.4 9e-11 seq2 82.4 9e-11 >seq93 Length=974399 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 ||||| ||||||||| |||||||||| | |||||||| || || ||||| |||||| Sbjct 914947 GAATCGGCTATGTATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATT 915006 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||| || || || ||||| || | ||||| || | ||| ||||||||| ||||| Sbjct 915007 GCAATCTGAAAGCCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTT 915066 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || | ||||||||||| || ||||| || || ||||| || || | | ||| Sbjct 915067 TCCACTAAGTTTTCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAG 915126 Query 93533 ATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||||||||||||||||| | | | ||||| ||||||| ||| |||| Sbjct 915127 ATAAAATGTTTCTCATCCTTTGTCAGCTTTGCCCAATCTGATCGATC 915173 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||||||| ||||||||||||||||| || | |||||| | || |||| ||||| Sbjct 914629 TCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCTTA 914688 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || | |||||| || ||||| || || ||||| ||||| || ||||| || Sbjct 914689 AGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGGCA 914748 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 | | || || ||||| | || || | | ||||| || | ||||||||||| Sbjct 914749 ATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGGCC 914808 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || ||||| | ||| || |||||||| || || ||||||| || |||| Sbjct 914809 TTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATACTCTC 914857 >seq4657 Length=2132 Score = 123 bits (136), Expect = 3e-23 Identities = 86/97 (89%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 || |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | Sbjct 167 AGCCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCGCGGGATC 226 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGG 126359 |||||||||||||||||||||| || | ||| |||| Sbjct 227 GTGGGTTCGAACCCCACACCTGGCATAGGATTTTTGG 263 >seq141 Length=663046 Score = 122 bits (134), Expect = 1e-22 Identities = 79/86 (92%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAG 126321 |||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| Sbjct 335160 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCCCTCATGGGGT 335219 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||| Sbjct 335220 CGTGGGTTCGAACCCCACACCTGACA 335245 >seq13 Length=3162058 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAG 126321 ||||||||||||||||||||||||||||| |||||||||| |||| | ||||| ||| Sbjct 1126200 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCTCATGGGGT 1126259 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||| Sbjct 1126260 CGTGGGTTCGAACCCCACACCTGACA 1126285 >seq1 Length=5261296 Score = 116 bits (128), Expect = 4e-21 Identities = 86/98 (88%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 126254 CTTCTATTTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC 126312 || |||| ||| ||||||||||||||||||||||||||| |||||||||| |||| | | Sbjct 3219950 CTGCTATCGACACGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCC 3220009 Query 126313 CCTC--GGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||| ||| ||||||||||||||||||||||||||| Sbjct 3220010 CCTCATGGGGTCGTGGGTTCGAACCCCACACCTGACAA 3220047 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 ||||||||||||||||||||||||||| |||||||||| |||| | ||||| ||| || Sbjct 3218711 GTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCTCATGGGGTCG 3218770 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 3218771 TGGGTTCGAACCCCACACCTGACAA 3218795 >seq169 Length=790587 Score = 114 bits (126), Expect = 1e-20 Identities = 83/95 (87%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 ||||||||||||||||||||||||||| |||||||||| |||| | ||||| ||| || Sbjct 560569 GTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCTCATGGGGTCG 560510 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||||||||||||||||| |||| ||| Sbjct 560509 TGGGTTCGAACCCCACACCTGACAGTATATTTTTG 560475 >seq67 Length=1439826 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 ||||||||||||||||||||||||||| |||||||||| |||| | ||||| ||| || Sbjct 895686 GTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCTCATGGGGTCG 895627 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 895626 TGGGTTCGAACCCCACACCTGACA 895603 >seq571 Length=104822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 8/91 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||||||||||||||||| |||||| || || Sbjct 67907 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTG 67848 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 67847 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 67817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 8/91 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||||||||||||||||| |||||| || || Sbjct 80612 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTG 80671 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 80672 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 80702 >seq506 Length=121678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 8/91 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||||||||||||||||| |||||| || || Sbjct 51302 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTG 51361 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 51362 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 51392 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/84 (81%), Gaps = 8/84 (10%) Strand=Plus/Minus Query 126272 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTCGGGAGCG 126323 ||||||||||||||||||| |||||||||||| |||||| || || || ||| Sbjct 47730 TTGGCCGAGTGGTCTAAGGTGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTGCGGGGCG 47671 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||| ||||| ||||||| Sbjct 47670 TGGGTTCGAATCCCACTCCTGACA 47647 >seq133 Length=661704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 8/91 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||||||||||||||||| |||||| || || Sbjct 567036 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTG 566977 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 566976 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 566946 >seq104 Length=849383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 8/91 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||||||||||||||||| |||||| || || Sbjct 841559 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTG 841500 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 841499 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 841469 >seq132 Length=671578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/91 (81%), Gaps = 8/91 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTC 126316 ||||||| ||||||||||||||||| ||||||||||||| |||||| || || Sbjct 48198 AGTCAGGGTGGCCGAGTGGTCTAAGACGCCAGATTTAAGCTCTGGTCCCACGTTGCTCTG 48139 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 || ||||||||||||| ||||| ||||||| Sbjct 48138 CGGGGCGTGGGTTCGAATCCCACTCCTGACA 48108 >seq84 Length=1084455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 |||||| |||||||||||||||||||| ||| || |||| ||||| | |||| || Sbjct 172666 GTCAGGATGGCCGAGTGGTCTAAGGCGGTAGACTTCTCGTCTGCTTCCCCCATGGGATCG 172725 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||| ||||| ||||||| Sbjct 172726 TGGGTTCGAATCCCACTCCTGACA 172749 >seq75 Length=956533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/81 (81%), Gaps = 8/81 (10%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC--------CTCGGGAGCGT 126324 ||||||||||||||||||||||||||||||| |||||| || || || |||| Sbjct 64981 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTCCCGCGTTGCTCTGCGGGGCGT 65040 Query 126325 GGGTTCGAACCCCACACCTGA 126345 ||||||||| ||||| ||||| Sbjct 65041 GGGTTCGAATCCCACTCCTGA 65061 >seq2 Length=4633378 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 |||||| |||||||||||||||||||| ||| || |||| ||||| | |||| || Sbjct 57359 GTCAGGATGGCCGAGTGGTCTAAGGCGGTAGACTTCTCGTCTGCTTCCCCCAGGGGATCG 57300 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||| ||||| ||||||| Sbjct 57299 TGGGTTCGAATCCCACTCCTGACA 57276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556817204760120