Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3962 109 5e-19 seq275 104 2e-17 seq45 91.5 1e-13 >seq3962 Length=6517 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||||| || || || || | Sbjct 187 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 246 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || | |||| || || || ||||| ||||| || || || ||||| Sbjct 247 GATTCCATCGAGAACGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 306 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| ||||||| | || || |||||| Sbjct 307 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCTTGTCTGACTACAAC 366 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||||||| | ||| | ||| | || |||| || ||| Sbjct 367 ATCCAGAAAGAATCCACCCTCCATCTTGTTCTCCGTCTGCGTGGTGGT 414 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | ||||| || || |||| || || || || || | Sbjct 6099 ATGCAGATTTTTGTCAAGACTCTTACCGGCAAGACCATCACACTAGAGGTTGAGCCCTCT 6158 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || ||||| || ||||||||||| ||||| || || || Sbjct 6159 GACTCAATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 6218 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| ||| ||| |||| || || ||| Sbjct 6219 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTATAAC 6278 Query 22399 ATTCAAAAAG 22408 ||||| |||| Sbjct 6279 ATTCAGAAAG 6288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || ||||| || | || || || |||||||| Sbjct 43 AAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAGAGACTGATCTTCGCCGGCAAG 102 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| ||||||| | || || |||||||| || |||||||| ||| | ||| Sbjct 103 CAACTTGAGGATGGCCGCACCTTGTCTGACTACAACATCCAGAAAGAATCTACCCTCCAT 162 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || |||| || ||| Sbjct 163 CTTGTTCTCCGTCTGCGTGGTGGT 186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||||||||| || ||||| || | | || || || ||||| Sbjct 5876 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGAGATTGATTTTCGCTGGCAAG 5935 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 || | |||||| ||||||| | || || |||||||| ||||||| Sbjct 5936 CAACTTGAGGATGGCCGCACCTTGTCAGACTACAACATCCAAAAAG 5981 >seq275 Length=398669 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || ||||| |||| | || || ||| || | Sbjct 170536 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTCA 170595 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | ||||| |||||||| |||||||| || || || || || || Sbjct 170596 GACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 170655 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | |||||| ||||| | || || |||||| Sbjct 170656 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACAAC 170715 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 170716 ATTCAAAAAG 170725 >seq45 Length=1811775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG--TACTCGACAATTTCGGCGC 129757 || |||||||| || || ||| |||| | | | | | ||||| ||||| || | || Sbjct 849881 GATGCCAAATTACAAACAGCAATTTC--TGTCGGCGAGGAATACTCAACAATCTCAGTGC 849938 Query 129758 ACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCAT 129817 | | ||| || ||||||| || || | || || ||||| ||| ||||||||||| Sbjct 849939 AAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTTGCAAGCAT 849998 Query 129818 CTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 ||||||||| |||||| || ||||| ||||| ||||| | || | ||||| Sbjct 849999 CTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGG 850049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419695962030595