Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5638 102 2e-16 seq367 93.3 9e-14 seq105 93.3 9e-14 seq67 93.3 9e-14 seq4 91.5 3e-13 seq3551 89.7 1e-12 seq1129 89.7 1e-12 seq77 84.2 4e-11 >seq5638 Length=9539 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 8719 GTCTCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 8778 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 8779 CCCGCCAGGGA 8789 >seq367 Length=170816 Score = 93.3 bits (102), Expect = 9e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| |||||||||||| Sbjct 166299 GTCCCTGTAGCGCAGTGGATAGCGCGTCGGACTTCTAATCCGAAGGTCGCGGGTTCGACC 166358 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 166359 CCCGCCAGGGA 166369 >seq105 Length=1022534 Score = 93.3 bits (102), Expect = 9e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 330866 GTCCCTGTAGCGCAGAGGAAAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 330807 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 330806 CCCGCCAGGGA 330796 >seq67 Length=1439826 Score = 93.3 bits (102), Expect = 9e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 1008099 GTCCCTGTAGCGCAGAGGAAAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 1008040 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 1008039 CCCGCCAGGGA 1008029 >seq4 Length=4567600 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 3450967 AGCCCGGTTAGCTCAGTCGGTAGAGCGTGGGACTTTTAATCCTAAGGTCGTGGGTTCGAC 3450908 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 3450907 CCCCACATCGGGC 3450895 >seq3551 Length=5113 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 || ||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||||| Sbjct 2057 CAAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCG 2116 Query 142110 ACCCCCGCCAGAGACGC 142126 | |||| |||| || || Sbjct 2117 ATCCCCACCAGGGATGC 2133 >seq1129 Length=22085 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 21994 GCCCGGCTAGCTCAGTCGGTAGAGCACGGGACTCTTAATCCCGGGGTCGTGGGTTCGAGC 21935 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 21934 CCCACGTTGGGC 21923 >seq77 Length=1088632 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 986716 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 986657 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 986656 CCCCACGTTGGGCGGA 986641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027754321557183