Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq19 145 1e-29 seq275 141 2e-28 seq3962 138 2e-27 >seq19 Length=2947477 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || || || || || || | |||||| |||||||| | |||||| || ||||| | Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||| | || ||||| || || || ||||||||||| |||||||| ||||| || || Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | |||| |||| | || || || | |||||||| || ||||| ||||||||||||| Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 340739 AGATCTGCAT 340748 >seq275 Length=398669 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| ||||| || || || ||||| | |||||| || | |||||| || || || | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || | || ||||| || || || ||||||||||| ||||| || || |||||| || Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || | ||||| | ||| || || |||||||| ||||| || |||||||| || || | Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 170545 AGATCTGCATT 170535 >seq3962 Length=6517 Score = 138 bits (152), Expect = 2e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || || || | || | || || || | Sbjct 394 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCCTCGA 335 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| |||||||| || |||| || || || || || ||||| || ||||| || | Sbjct 334 GTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTGGA 275 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| |||||||| || | | || || |||| |||||||| || | Sbjct 274 TCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGC 215 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||||||||| |||||||| Sbjct 214 CTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| || || || | || | ||||| || | ||||| || ||||| | Sbjct 5981 CTTTTTGGATGTTGTAGTCTGACAAGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAA 5922 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | ||| || || || || ||||| || ||||||||||| ||||| ||||| || || Sbjct 5921 TCAATCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCT 5862 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 |||| | |||| | || || |||| ||||||||| || || || || Sbjct 5861 CGATAGAATCTGAGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTAAG 5813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921550248486360