Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq122 385 1e-102 >seq122 Length=4874392 Score = 385 bits (426), Expect = 1e-102 Identities = 782/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 23346 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 23405 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 200919 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 200860 Query 23406 GTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 23463 || ||||| || ||||| ||| |||||||| || | || ||| || || | Sbjct 200859 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 200800 Query 23464 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 23523 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 200799 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 200742 Query 23524 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 23583 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 200741 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 200682 Query 23584 CGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 23643 | ||| ||||| ||||| || | |||||| |||||| || | ||| |||||||| | Sbjct 200681 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGTAGTTTT 200622 Query 23644 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 23700 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 200621 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 200562 Query 23701 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 23760 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 200561 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 200505 Query 23761 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 23820 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 200504 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 200445 Query 23821 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 23880 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 200444 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 200389 Query 23881 CCGGCGCCGGGAT-GACGG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 23936 | |||| || || | | | ||| || | | ||| | || |||| ||| |||| Sbjct 200388 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 200329 Query 23937 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCCTGCGGTACGCGGCGGCTTCTTCC 23996 |||||||||||||| | ||||| |||| ||| | ||| ||| | || || | Sbjct 200328 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 200271 Query 23997 TT--CGTCTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 24054 || ||| || |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 200270 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 200211 Query 24055 CCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCT 24114 |||| ||||||| || || | ||| ||| || || ||| || ||||||| ||||||| Sbjct 200210 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 200151 Query 24115 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 24174 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 200150 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 200091 Query 24175 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 24233 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 200090 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 200032 Query 24234 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 24292 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 200031 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 199973 Query 24293 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACGTTCGTCAGCAGCACGGGCGT 24352 |||||| | ||||| || || | ||| || |||| || | |||||| ||||| Sbjct 199972 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 199913 Query 24353 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 24412 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 199912 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 199853 Query 24413 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 24472 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 199852 AGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 199793 Query 24473 GTGGTAAT 24480 ||| |||| Sbjct 199792 GTGATAAT 199785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114241102900218