Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq122 403 4e-108 >seq122 Length=4874392 Score = 403 bits (446), Expect = 4e-108 Identities = 786/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 24350 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 24409 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 200919 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 200860 Query 24410 GTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 24467 || |||||||| ||||| ||| |||||||| || | || ||| || || | Sbjct 200859 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 200800 Query 24468 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 24527 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 200799 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 200742 Query 24528 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 24587 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 200741 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 200682 Query 24588 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 24647 | ||| ||||| ||||| || | ||| || |||||| || | ||| |||||||| | Sbjct 200681 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGTAGTTTT 200622 Query 24648 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 24704 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 200621 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 200562 Query 24705 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 24764 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 200561 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 200505 Query 24765 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 24824 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 200504 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 200445 Query 24825 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 24884 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 200444 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 200389 Query 24885 CCGGCGCCGGGAT-GACAG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 24940 | |||| || || | ||| ||| || | | ||| | || |||| ||| |||| Sbjct 200388 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 200329 Query 24941 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCC 25000 |||||||||||||| | ||||| |||| ||| | | ||| ||| | || || | Sbjct 200328 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 200271 Query 25001 TT--CGTTTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 25058 || |||||| |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 200270 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 200211 Query 25059 CCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCT 25118 |||| ||||||| ||||| | ||| ||| || || ||| | ||||||| ||||||| Sbjct 200210 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 200151 Query 25119 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 25178 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 200150 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 200091 Query 25179 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 25237 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 200090 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 200032 Query 25238 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 25296 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 200031 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 199973 Query 25297 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGT 25356 |||||| | ||||| || || | |||||| |||| || | |||||| ||||| Sbjct 199972 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 199913 Query 25357 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 25416 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 199912 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 199853 Query 25417 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 25476 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 199852 AGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 199793 Query 25477 GTGGTAAT 25484 ||| |||| Sbjct 199792 GTGATAAT 199785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117277677043912