Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4 149 6e-31 >seq4 Length=4567600 Score = 149 bits (164), Expect = 6e-31 Identities = 238/339 (70%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 || |||||||| | ||||||||| | ||| | |||||||||||||||||| || || ||| Sbjct 989151 GTTACATGAGCTATCATATAAGTAAGGAGAGCATAGCTGGCAATGTTAAATGGGACACCC 989092 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 | ||||| ||| | ||||| ||||| || ||||| || || ||||| | || |||||| Sbjct 989091 AGTCCCATATCTGCTGACCTTTGATAGAGTTGACAAGACAGTTCACCATTTGCCACATAA 989032 Query 20363 AATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||||| ||| ||| || || ||||| | ||||| | | ||| | || ||||| Sbjct 989031 AATTGCACAAGGCAA-TGGCAAGGCGGTAAAGCCATTTTTGGGACGTCAACAGGATTCCA 988973 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGA 20481 |||||||| | |||||||| || | || ||||||||||| | | | | Sbjct 988972 TGCACACATGAGAATTCTTCTGTCATCAGGTCTATTTTTTATTTTACTGATCACATCACT 988913 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 || ||||||| || | | | ||||||| | | || || || | || ||||| Sbjct 988912 CAGCTGGTCAATACCTTTGTTGCTGTAGTCAGTAAACATATCTACATATTCAGCACCAAA 988853 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 || | |||||| || || || ||||| |||||||| || Sbjct 988852 ATGGCGCCACTGAAATCCATATACAGGACCCAAATCACC 988814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441338246026920