Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq122 504 2e-138 >seq122 Length=4874392 Score = 504 bits (558), Expect = 2e-138 Identities = 744/1041 (71%), Gaps = 22/1041 (2%) Strand=Plus/Plus Query 18994 TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGCAAGGCCGGC 19053 ||||||||| |||| || || ||| | ||| || |||||| | || || ||||| Sbjct 199901 TTCCCGCTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGT 199960 Query 19054 GACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAGACCAACCCGCTCACG 19113 | || |||||||| || | |||| | || || ||||||||| ||| ||| | ||| Sbjct 199961 GTCAGCGGCACGCTGGCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACG 200020 Query 19114 GTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAACCTGATCGGC 19173 || ||||||||||| | | |||| ||| || | ||||| ||| | |||||| Sbjct 200021 GTGGTGGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAATATCATCGGC 200080 Query 19174 ACCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGCTGCTGACCGCCCGCA-ACCG 19232 || | | || |||||| |||||||| ||||| |||||||| | || ||| |||| Sbjct 200081 GGCAGCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGC--GCAGACCG 200138 Query 19233 TT-TTGGCGTCGCGCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGA 19291 ||||||| |||||| || || | ||||||||||| || ||| ||| | | Sbjct 200139 ACCTTGGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCA 200198 Query 19292 CCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGGCT 19351 ||| ||||| | ||| ||| ||||||||||||||| ||| | ||||| ||||||| Sbjct 200199 CCGCGCTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCT 200258 Query 19352 GCCAAACCAAGGAAGAG--GCCGTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGCGAT 19409 | |||| | ||| | || || || ||| |||||| |||||||||| ||| Sbjct 200259 GTAAAACG--GTAAGCGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGAT 200316 Query 19410 GGTGATGTGGCCGGATTTCGTCGGCTGGGATACCGCCGCCAATGCCGAGACCAC--CCTG 19467 |||||| ||||| || || |||| |||| | |||| ||| || | | || ||| Sbjct 200317 GGTGATCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTA 200376 Query 19468 TGGGCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCAC 19527 || |||| |||||||| ||||| |||||||||| ||||| ||||||| ||||||||| Sbjct 200377 TG--CCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGGCTGGCAT 200434 Query 19528 AAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGCGACG-TGTTCTG 19586 || || || || ||||| | || |||||||||||| | || ||| || | ||||| Sbjct 200435 AAAACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTC-CGCCTCGGTATTCTG 200493 Query 19587 GGACCTTCAGGACCCGGCGACCGACGCGG----GCTACCTGAACGCCAACGAGGTGACCA 19642 |||||| ||| | || |||||| || | ||| |||| |||| || | |||| Sbjct 200494 GGACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAA-GCCAGCG---TCACCA 200549 Query 19643 CGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGC 19702 ||||| | | | ||||| | ||||||||||||| ||||| || || | || |||| Sbjct 200550 CGCTGATCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGC 200609 Query 19703 TGTTCGCCTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAG 19762 |||||||||| || |||||||||||| | ||||||||| | |||||||||||||| || | Sbjct 200610 TGTTCGCCTTTGAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATG 200669 Query 19763 CACACATGTGGGCGAACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGG 19822 | || |||||||| |||||| ||| ||||||| || || |||||||| | | | | Sbjct 200670 CGCATATGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCG 200729 Query 19823 GCATCAATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGCCGCGT 19882 | ||||| |||||||| || ||||| | | ||| || |||||||||| | | | Sbjct 200730 GGATCAACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCT 200789 Query 19883 GGTTCGACGCGGACGCCAACAGCAAGGACACGCTGAAGGCCGGGCAACTCGCCATCGACT 19942 ||| ||||| |||||||||| |||| | ||||| ||||| | || ||||||| Sbjct 200790 GGTACGACGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACT 200849 Query 19943 ACGACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACCGACC 20002 ||||||| || || || || || ||||| | || || | || |||||||| |||||| Sbjct 200850 ACGACTATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACA 200909 Query 20003 GCTACCTGATGCAGTTCGCCG 20023 |||||||| | | ||||||| Sbjct 200910 GCTACCTGGCGAACTTCGCCG 200930 Score = 237 bits (262), Expect = 4e-58 Identities = 785/1202 (65%), Gaps = 43/1202 (4%) Strand=Plus/Plus Query 14505 CTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGG 14564 |||| || ||||||||| |||||| || |||||||||||||||||||| || | | Sbjct 197033 CTGGCGTCGGAGCCGATCGTCAAGCTGCTGGAGGAGAACGCCTACCGCGAGGTGATCCTG 197092 Query 14565 CGCCAGCGCGTGAACGACGCGGCGCGTGGGGTCATGCTGGCCTTCGCCGAAGGGGAAG-- 14622 ||||||||| | ||||| |||||| | |||| |||| |||||| || || || Sbjct 197093 CGCCAGCGCATTAACGAAGCGGCGAAAGCCACCATGGTGGCATTCGCC--AGCGGCAGCG 197150 Query 14623 ACCTGGAGCAGATTGCGGCGAACTTCAACGTGCAGCGTCTGACCATCACGCCGGCTGACA 14682 | || || ||| ||| || ||| | ||| |||||| | | || || || | Sbjct 197151 ATCTCGACCAGCTTGGGGTCAACAACGGCGTCACCCGTCTGGTGCTGAAACCCGCAGATA 197210 Query 14683 CCACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGACTCGCTGCGCGAGCGC- 14741 || ||| |||||||||| || || | | ||| |||||||| | || |||| Sbjct 197211 ACAGCACGCTGCCGCCGACCCCGGCGCGGCTTGAGAGCGACGACGACTTCCGTCTGCGCA 197270 Query 14742 --GCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAGGCCTACGAGCAGT 14799 || |||| | ||||| |||||| |||||| || ||| | |||||| || | Sbjct 197271 TCGCCCAGG---CCTTTGAGGGGCTGAGCGTGGCGGGGCCGGGCGGGGCCTATGAATATC 197327 Query 14800 TCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGCCCGGCCGGCGCGG 14859 ||| ||| || || || || |||||||| | ||| ||||||||| || || | Sbjct 197328 ACGCCCGCAGCGCCGATGGTCGCGTGGCGGATGTCACCGCCATCAGCCCGTCCCCGGCCG 197387 Query 14860 AGGTGGTGGTCTCGGTGCTGTCGCACCTGAACGACG--GCGCGGCCGACGAGAGCCTGCT 14917 ||| || | |||||||||| |||| | || ||| |||| || ||||| Sbjct 197388 TGGTCACCATCACCGTGCTGTCGCG--TGAAGGGCGCGGCGAGGCCAGCGCTGAACTGCT 197445 Query 14918 GGCGGCTGTACGCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGGCGACCGCCTGAC 14977 ||| | || | | ||| ||| || || || || ||| | | || ||| | | Sbjct 197446 GGCCGTCGTCAACGCGGCGCTGAATGACGAGGAGGTGCGCCCGGTGGCGGATCGCGTCAG 197505 Query 14978 GGTGCAATCCGCCACCATCGTCCCATACCGCATCCGTGCCACGCTGTACCTGGCATCGGG 15037 ||||| || || | |||||| |||||| | |||||||||| || | || Sbjct 197506 CGTGCAGTCGGCAAAAATCGTCGAGTACCGCGTTGAGGCCACGCTGTTTCTCTATCCCGG 197565 Query 15038 GCCGGCGGCCGAGCCGATCCTGGACGC---GGCTGGCAAGCGGGCCGACGTCT--ACCGC 15092 ||||| ||| |||||||||| | ||| ||| | | || ||| | | | | ||| Sbjct 197566 GCCGGAGGCGGAGCCGATCCGCGCCGCCTCGGCAGCCCGGCTGGCGGCCTTTGTAAACGC 197625 Query 15093 ACCACGCGGCGGCGCATCGGTCGCGACATCAACCGCTCGGCGATCACGGCGGCGCTGCAT 15152 ||| || |||| | || ||||| ||| | | || ||| | ||||||||||| Sbjct 197626 -CCAGTCG-CGGC---TGGGGCGCGATATCCGCAGGTCAGCGCTGTATGCGGCGCTGCAC 197680 Query 15153 GTGGAGGGCGTGGAAAAGCTGGTGCTGCACGAACCGGCCGAAGACATCGCGCTCGATCTG 15212 || ||||| || | | | |||| | || || | || | | ||| ||| Sbjct 197681 GTCGAGGGTGTCCAGCGCGTAGAGCTGGCGCAGCCTGCTGCTGATGTGGTGCTGGATAAA 197740 Query 15213 ACGCAGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGGGCACCAGTGAGT-AGCG 15271 || ||||||| |||||||||| | | |||| || || || ||||| | || Sbjct 197741 ACCCAGGCGGCGTACTGCACCGCTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGACCG 197800 Query 15272 CAACCCTGTTGCC-GCCGAACGCGACGCCGCTGGAGCGTCGC-GCCGCGCAGACGGGCGC 15329 | ||| |||| | || | || | | ||| ||| || || ||||| | | | || Sbjct 197801 C----CTGCTGCCCGTCGG-CTCGTCACAGCTCGAG-GTGGCCGCCGCCGAAGCCTGTGC 197854 Query 15330 ACGCATCGAACGCGTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAGCCACCTGTCCG-- 15387 ||| | | | ||||||||||||||||| |||||||||||| || || ||| Sbjct 197855 GCGCCTGCAGCAGCTGCCGGTGCCGCTGCGCACCCTGTGGAACCCGCAGACTTGCCCGCT 197914 Query 15388 GCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGGAACCCGGCCTGG 15447 ||| |||| | |||| || |||||| | | || ||||| |||||| | | || ||| Sbjct 197915 GCC--GCTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGGATCGCTGGGATCAGGAGTGG 197972 Query 15448 CCGCTCGCCACCAAGCGCGCCGTGACGGCCGCCTCCTACTTCGTGCACCGCAAGAAGGGC 15507 ||| | |||| ||| || ||| |||||||| | || | |||||| |||||| Sbjct 197973 CCGGAAGAGACCAGGCGTGCGGTGGTCGCCGCCTCGCAGTTTATCCACCGCCGCAAGGGC 198032 Query 15508 ACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTTCCTGATTCGCGTCATCGAG 15567 || ||| ||| | ||||| | ||||||||||||||| | ||||| |||| ||| Sbjct 198033 ACCATCTCGGCGATCCGCCGGGTGGTGGAGCCGCTGGGGTATGTGATTAACGTCCATGAG 198092 Query 15568 TGGTGGCAGACCAACCCGCCCGGGCCGCGCGGGTCGTTCGGGCTCGATGTGGGCGTGCTG 15627 |||||||| |||| || |||| ||| | ||| | || ||| | ||||||||| Sbjct 198093 TGGTGGCAAACCA------GCGAACCGCCCGGCACCTTCCGCCTTGATATCGGCGTGCTG 198146 Query 15628 CAAACCGGCATCGACGAGGCCATGTACGCCGAGCTGGAACGCCTCATTGACGACGCCAAG 15687 || | ||||| || || || |||| ||| |||| || || || | ||| || || Sbjct 198147 GAATCAGGCATTGATGAAGCGATGTTTAACGAAATGGAGCGGCTGATCGGCGATGCAAAA 198206 Query 15688 CC 15689 || Sbjct 198207 CC 198208 Score = 84.2 bits (92), Expect = 5e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 14068 CAGTCGGTGCGCGACATCCTCTCCACGCCGATCGGCTCGCGCGTGATGCGCCGCGACTAC 14127 |||||||||||||||||||| || ||| |||||||| ||||||||||| |||||| Sbjct 196611 CAGTCGGTGCGCGACATCCTGCTGACCCCGCAGGGCTCGCGGGTGATGCGCCGTGACTAC 196670 Query 14128 GGCAGCCAGGTCCCCGACTTGATCGATCAGCCGTTGAACCCGGCAACCCGCCTGCGCACC 14187 ||| | | | | | || |||| |||||| |||| | | ||||||| | Sbjct 196671 GGCTCGCTGCTGTCGGCGCTGCTCGACCAGCCGCAGAACGAGACGCTGCGCCTGCAGATT 196730 Query 14188 ATGTCCGCC-GC--CGTGTCTGCCCTGGTGCGCTGGGAGCCGCGTATC 14232 ||||| ||| || | || || ||| |||||||||||||||| ||| Sbjct 196731 ATGTCGGCCTGCTACATG---GCGCTGCTGCGCTGGGAGCCGCGCATC 196775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123901184396332