Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq2664 228 2e-55 seq620 152 2e-32 seq1959 91.5 4e-14 >seq2664 Length=6989 Score = 228 bits (252), Expect = 2e-55 Identities = 256/341 (75%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 46369 AGCTGGAGAAAAAACACGAATCTGTGGTTTTTACTGAGCGCGGTGTACACGGTGGAACAT 46428 |||| |||||||| ||||||||||||||||| |||||||| || || | || || || | Sbjct 88 AGCTTGAGAAAAACCACGAATCTGTGGTTTTCACTGAGCGGGGAGTCAAAGGGGGTACTT 147 Query 46429 ATGGCGGGAAGTTTGTTGCTTATGATTATGCAGCATGGCTAAACCCCGGATTTAAATATG 46488 |||| || |||||||| || ||||| ||||| |||||||||||||| ||||||||||||| Sbjct 148 ATGGTGGTAAGTTTGTGGCATATGACTATGCGGCATGGCTAAACCCTGGATTTAAATATG 207 Query 46489 CAGCCTATAAAGTCCTGGATGACTACTTCACCGGAGGACTTCAGCATCGCAACAGCT--- 46545 |||| || ||||| || ||||| || ||||| || |||| || |||| |||| Sbjct 208 CAGCGTACAAAGTTCTTGATGATTATTTCACAGGTCAACTT---CAACGCAGAAGCTCTC 264 Query 46546 TAAGTGCGCAGCTCAATATGAAGTGTCATGAGTTTGATCAGAAAAAAGATATGGCGAGCT 46605 | || || ||| | ||||| || ||| |||||||| ||||| |||||||||||||| | Sbjct 265 TCAGCGCTCAGTTGAATATTAAATGTATGGAGTTTGACCAGAAGAAAGATATGGCGAGTT 324 Query 46606 TCTGTGGACAAGGGCTGGCGGCATGGCGCTATACGAAGCCAGTGTTGGTCGCTGAGATTA 46665 | || || || ||| |||| | ||| || || | || |||| |||||||| | Sbjct 325 TTTGCGGGCAGGGGTTGGCTGGCTGGAAACATGAAAAAGCTGTTCTGGTTGCTGAGATAA 384 Query 46666 ACTCCCTGGCTAACCAGCTGCAGATAACGATCCCCGGGCTG 46706 | || ||| | | ||| | |||||| | || || | |||| Sbjct 385 ATTCTCTGACAAGTCAGTTACAGATATCCATACCTGAGCTG 425 >seq620 Length=44282 Score = 152 bits (168), Expect = 2e-32 Identities = 234/333 (70%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 37483 ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAAA 37542 ||||| ||||| | ||||| || || ||||||| |||||| || || | || ||| Sbjct 6818 ATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCCGCTTCGGAAA 6877 Query 37543 CTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTAC 37602 ||||||| | |||||||| ||||||||||| || | || || |||||||| ||| Sbjct 6878 TTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTGGCCGAGCCTT 6937 Query 37603 CAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGCC 37662 | | || || || ||||| ||||| || ||||| ||||| ||||| || | || Sbjct 6938 CGTAACATCGCCGATCAGTGTGAGATAAGTCGCCGTTCGGTGATAAATCACATCGATGCT 6997 Query 37663 CTTTGTGAGTCCGGGCTGGTaaaaaaaG----TCACCCGGAAAGGTGAAAAAGGTAACTC 37718 |||||||| | || || | | ||||| || ||| || | ||||| || || Sbjct 6998 CTTTGTGAATTTGGCCTCCTGAGAAAAGAGCATCGCCC----TGGCGTCAAAGGGAATTC 7053 Query 37719 AAGTAATATCTATCTCCTTCATCTGGATGGTGCAGGAGATTCACTAGGGGGTAGTGCAAA 37778 ||| ||| |||| ||| | | ||||||||||||||| ||| ||||||||||||| Sbjct 7054 AAGCAATCTCTACTACCTGACTTTAGATGGTGCAGGAGATGCACCAGGGGGTAGTGCAGG 7113 Query 37779 TAATTCACTATCTGGTGCAGCAAATTCACCAGG 37811 | ||| || |||||| | |||||||||| Sbjct 7114 AGCTGCACCCCCTAGTGCAGGAGATTCACCAGG 7146 >seq1959 Length=43063 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 46029 GAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCAGCAGCGTCAGCGTGATGTTGCT 46088 || || |||| ||| | | || ||| | ||||||||| || ||||| ||||||||| Sbjct 9607 GATCTTAAGCTGGCTAAGTCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCT 9666 Query 46089 GCGATCGATGCAAAATACACGAAGGAGTTAGCCGATGCGAAAACTGAAAATGAAACTCTG 46148 || |||| ||||| ||||| ||||||||||| ||||| ||| | || || |||| Sbjct 9667 GCACTCGACGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTC 9726 Query 46149 CGCGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCG 46183 ||| || ||||| | ||| || ||||| |||| Sbjct 9727 CGCAATGCTGTTGATGATGGCCGCAAGCGGTTGCG 9761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150334418327898