Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq122 219 2e-52 >seq122 Length=4874392 Score = 219 bits (242), Expect = 2e-52 Identities = 447/650 (69%), Gaps = 18/650 (3%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || || ||||| | ||| |||||||| ||||||||||| | ||| || | |||||||| Sbjct 3303163 TCTTCAAACATGATGTACGGATAGCCGGACTCAAACTGGATCTCGGCCAGCGTCTGGAAA 3303104 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGA-TCCTATCATCTTTTAGCCACGTGTCGTA 60028 | | || | || |||||||| |||| | | || || ||| | || || Sbjct 3303103 AATTCACGCGGGTTAATAAAGGTGCG-GCGAATGCGCTCGTCGGCCAGCATCTCTTCATA 3303045 Query 60029 CATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGG 60088 | | ||| | | | || |||| | | | ||||| | | | |||||| || Sbjct 3303044 CTTTTCGCTGATGCTGATATCGGCAAACGGCAGGCCGTAAATACGCTCAACGTCATACGG 3302985 Query 60089 AGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGAT 60148 ||||| || ||||| |||| | | || || || || |||| || ||||| || | | Sbjct 3302984 TGAGAACAGCGCCATGGGCTGGTTATCTTTCGCCAGCTGGAAAGTCACATCCGGGATCAC 3302925 Query 60149 AACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATC 60208 || || || || || || ||||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 3302924 CACGCCGAGCGACAGCGTTTTAATGCGGATTTTCTCATCGGCATTTTCGCGCTTGGTGTC 3302865 Query 60209 CAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCC 60267 ||||| |||| |||| || |||||||| || |||| ||||||||| || || ||||| | Sbjct 3302864 GAGGAAGCGCA-GGATATCAGGGTGGTGCGCATTCAGATATACCGCGCCAGCACCCTGAC 3302806 Query 60268 TTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGA 60327 ||| || || ||||| | ||| ||||| ||| || || ||||||||||| ||||| | Sbjct 3302805 GTGCGCCGAGCTGGTTGGCGTAAGAGAACGCATCCTCCAGCATCTTCATCACCGGGATCA 3302746 Query 60328 CTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGA 60385 | || || | ||| ||||||| | ||| ||||| || || | ||||| ||||| || Sbjct 3302745 CGCCGGACGACTG--GTTCTCGATGCGCTTGATCGGCGCGCCGGATTCGCGCAGGTTAGA 3302688 Query 60386 GA-ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG---AGAGTCCTGAACGA 60441 || || ||| || ||||| || ||||| || ||||| || |||| | || Sbjct 3302687 GAGCAGGAACGCC-ACGCCGCCGCCGCGCTTGGAGAGCTGCAGGGCTGAGTTC---ACCG 3302632 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || || || ||| |||| |||| | || || | |||||| || || ||| | Sbjct 3302631 CGCGGCCAATCGACTCCATATTGTCTTCAATGCGCAGCAGGAAGCAGGAGACCAGCTCAC 3302572 Query 60502 CTGCGTCGAGAAGCCCCGC-GTTGAGGAAGGTCGGAGTTGCAGGCTGGAA 60550 | ||| | |||| |||||||||||| || |||||||||||||| Sbjct 3302571 C-GCGCTGCTGCTTGCCGCAGTTGAGGAAGGTGGGCGTTGCAGGCTGGAA 3302523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225710770111220