Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq122 158 1e-33 seq83 154 2e-32 >seq122 Length=4874392 Score = 158 bits (174), Expect = 1e-33 Identities = 316/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867 || ||||||||||| | ||| || | |||||| |||| || || |||||||| | | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 135868 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135927 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 135928 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135987 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 135988 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 136045 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 2806091 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 2806034 Query 136046 CAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 136105 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 2806033 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 2805974 Query 136106 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCGT 136164 |||| ||| | ||| | ||| | | ||||||| || || || || || ||||| Sbjct 2805973 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 136165 GTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGAT 136208 || ||||| ||||| || | |||||| || || ||||| || || Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 2805871 Score = 125 bits (138), Expect = 8e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 3215646 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 3215705 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 3215706 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 3215765 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 || || | |||| || || ||||| || |||| ||||||||| || || || Sbjct 3215766 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 3215822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 134881 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 134938 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 2807207 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 2807150 Query 134939 TGTTAGATACCTGAGAAGACGACTCACAAGGCATCAGAGCCGAAAGCGTACTATTACGAA 134998 ||| || | ||| ||||| | |||| | |||||||| || || |||||| || || | Sbjct 2807149 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 2807090 Query 134999 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 135040 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 2807089 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 2807048 >seq83 Length=912621 Score = 154 bits (170), Expect = 2e-32 Identities = 290/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 135792 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCC 135851 ||| || || || || ||||||||||| || || || || | |||||| |||| || || Sbjct 580189 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 580130 Query 135852 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135910 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 580129 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 580071 Query 135911 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135970 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 580070 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 580011 Query 135971 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 136029 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 580010 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 579952 Query 136030 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 136089 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 579951 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 579892 Query 136090 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 136149 || ||| | | || ||||||| | || || ||| || || | ||| || Sbjct 579891 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 579832 Query 136150 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATT 136209 || || |||||||| || || || || || || ||||| || || ||||| | || ||| Sbjct 579831 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 579772 Query 136210 T 136210 | Sbjct 579771 T 579771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525494857100400