Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3962 136 9e-27 seq43 111 4e-19 seq275 107 5e-18 seq19 102 2e-16 seq212 84.2 5e-11 >seq3962 Length=6517 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | ||| |||||| ||||| || ||||| | Sbjct 413 CCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 354 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | ||| || || ||||||||||| ||||| ||| |||||| Sbjct 353 AAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGA---TCTGGG 297 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| |||||||| || || || ||||| || || ||||| | || Sbjct 296 GGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCA 237 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 236 ACCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || |||||||| | ||| || || || || || | || || || || |||| Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||||||||| || |||||| || || || || ||||||||||| || ||||| | Sbjct 6228 TCAGACGCTGCTGG---TCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACAT 6172 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || || || | || || || || ||||| ||||| ||||| |||||||||| Sbjct 6171 TCTCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGA 6112 Query 288461 CGAATATCTGCATT 288474 | || ||||||||| Sbjct 6111 CAAAAATCTGCATT 6098 >seq43 Length=2082672 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | ||| ||| || || ||||| ||||| | Sbjct 901073 TCCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGA 901014 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | || || || || ||||||| | ||| || ||||| Sbjct 901013 CAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGG---TCTGG 900957 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || |||||||||||||| || || || ||||| || || ||||| | || Sbjct 900956 GGGGATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTC 900897 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 900896 AACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq275 Length=398669 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| || || ||||| | || ||||| || || || | || ||||| || || | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | |||||||| || |||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 170665 TAAGACGCTGCTGG---TCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGT 170609 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || ||||| || | ||| || || | ||||| || ||||| || || || || | Sbjct 170608 TCTCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCA 170549 Query 288461 CGAATATCTGCATT 288474 | || ||||||||| Sbjct 170548 CAAAGATCTGCATT 170535 >seq19 Length=2947477 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || ||||| ||||| | | || | || ||||| | || || || ||||||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | |||||||| || |||||| || ||||| || ||||| || || || ||||| | Sbjct 340619 TGAGACGCTGCTGG---TCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACAT 340675 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || ||||| | || || || || ||||| ||||| || || || ||||||| Sbjct 340676 TCTCAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGA 340735 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 340736 CGAAGATCTGCAT 340748 >seq212 Length=676889 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 326200 GGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCG 326259 ||| || || | ||| |||||||| || |||||||| |||||||||||||| || || | Sbjct 83656 GGAAGCTTCTCTGACATTCAATAGCTTACCACGAAGTGGGAACACTCCATACCTATCTCT 83715 Query 326260 ACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAAT 326319 |||||| || || |||| | || | || || ||||| ||||| |||| ||| Sbjct 83716 ACCGACAACACCAAGTCCTGAAACAGCTAAGGTTTTAGCTGAATCTCCCTCAGTCAAAAT 83775 Query 326320 GAGAGTGCA 326328 ||||||||| Sbjct 83776 GAGAGTGCA 83784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179559739001314