Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_010106.1
Length=52975
Score E
Sequences producing significant alignments: (Bits) Value
seq122 484 2e-132
seq83 309 1e-79
>seq122
Length=4874392
Score = 484 bits (536), Expect = 2e-132
Identities = 766/1097 (70%), Gaps = 12/1097 (1%)
Strand=Plus/Plus
Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916
||||||||||| || ||||| || | || ||||||||| | |||| || ||||||||
Sbjct 2807636 ATGGCTTACACCACATTTTCGCAGAATAAAAATAACCAACTGTTAGAACCGATGTTCTTC 2807695
Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976
|| ||| || ||||| || || | ||||| ||||| || | ||| || || ||| |
Sbjct 2807696 GGACAGCCGGTAAACGTGGCGCGTTTCGACCAGCAGAAATATGACATCTTTGAAAAGCTG 2807755
Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036
|| || || || | || ||||||||||| |||||||| || ||||| || | || |||
Sbjct 2807756 ATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGT 2807815
Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096
||||| |||||| ||| || | ||||| ||||||| || | ||| || || |||
Sbjct 2807816 ATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTAT 2807875
Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156
|||| ||| || ||||| ||||||||||| | || ||| | ||||| || | |
Sbjct 2807876 CAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATC 2807935
Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216
|| || ||| |||| || ||||||||||||||| | |||||||||||||| || ||
Sbjct 2807936 TCGATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTCTCCGAGACTATCCACTCG 2807995
Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAA 52276
||||| || ||||| || ||||||||||| |||| ||||| | ||||||| ||
Sbjct 2807996 CGTTCGTACACCCATATTATTCGTAATATCGTTAACGACCCGGCGCTGGTCTTTGACGAT 2808055
Query 52277 ATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAA 52336
||||| || ||||| || ||| | |||| || | | ||||| || || |||||
Sbjct 2808056 ATCGTCACCAACGAGCAGATCCTGTCACGCGCCAAAGATATCTCTGGCTACTACGACGAT 2808115
Query 52337 CTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCA------TGCTGG- 52389
|| || | || | ||||| || | || ||||| | || ||| ||
Sbjct 2808116 CTGATCGAAATGACCAACTACTGGCATCTGCTGGGTGAAGGCACGCACCAGGTTGCGGGC 2808175
Query 52390 ----TCATGA-AATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCT 52444
| ||| | || ||||| | | |||| ||| |||| ||| | ||||| |||
Sbjct 2808176 AAAACCGTGACCGTCAGCCTGCGCGCGCTGAAAAAGCAGCTCTATATCTGCCTGATGAGC 2808235
Query 52445 ATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCA 52504
|||| || ||||||| || ||||| || |||||||| || ||||| || ||||| ||
Sbjct 2808236 GTCAACGCGCTGGAAGCGATCCGCTTTTACGTCAGCTTCGCCTGCTCTTTCGCCTTTGCC 2808295
Query 52505 GAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCA 52564
|| || | | |||||||| |||||||| || ||| | || || || ||||||||
Sbjct 2808296 GAGCGCGAACTGATGGAAGGCAATGCCAAAATCATTAAGCTGATCGCCCGCGATGAAGCT 2808355
Query 52565 CTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCA 52624
|| || |||| || |||||||| ||||||||||| || ||||| |||| || ||
Sbjct 2808356 CTGCACCTGACCGGCACTCAGCATATGCTGAACCTGCTGCGCAGTGGGGAAGACGATCCG 2808415
Query 52625 GAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCT 52684
||||||| || |||||| || ||||| ||||| ||| | | |||||| |||
Sbjct 2808416 GAAATGGCCGAGATTGCTAAAGAGTGCCGTCAAGAGTGCTACGATCTGTTCGTGCTGGCT 2808475
Query 52685 GCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTA 52744
|| | || ||||| || ||||| || ||| |||||| | || || ||||||||| |
Sbjct 2808476 GCCGAGCAGGAGAAAGAGTGGGCGGAATATCTGTTCAGCGGCGGTTCAATGATTGGCCTG 2808535
Query 52745 AACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTT 52804
|| || | ||||| || || | || || ||||| || || |||||| | || |||
Sbjct 2808536 AATAAAGATATTCTGTGGCAGTACATTGAGTACATCACCAACATCCGTATGAACGCTGTT 2808595
Query 52805 GGATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTG 52864
|| | ||| || || ||| | |||||||| |||||||| || | ||| ||
Sbjct 2808596 GGTCTGGATCTGCCGTTTAAAACCCGCTCGAACCCGATCCCGTGGATCAACTCGTGGCTG 2808655
Query 52865 AATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGG 52924
|| ||| || ||||||||||| |||||| ||| | || || |||||||||||
Sbjct 2808656 GTGTCCGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGCTCTTACCTGGTCGGA 2808715
Query 52925 CAAATTGACTCCGAAGT 52941
|| || ||||| |||||
Sbjct 2808716 CAGATCGACTCTGAAGT 2808732
>seq83
Length=912621
Score = 309 bits (342), Expect = 1e-79
Identities = 501/718 (70%), Gaps = 16/718 (2%)
Strand=Plus/Plus
Query 52160 ATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGT 52219
|| || ||| |||| || ||| ||||||||||| | |||||||| || || || ||||||
Sbjct 581888 ATCCCGGAACTGGAAACATGGGTTGAAACCTGGGCGTTCTCCGAAACGATCCACTCACGT 581947
Query 52220 TCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTA-TCTTTGATGAAAT 52278
||||| || || || ||||||||||| || | ||||| || || | || || || ||
Sbjct 581948 TCTTACACTCATATTATTCGTAATATCGTGAACGACCCG-GCTCTAGTATTCGACGATAT 582006
Query 52279 CGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACT 52338
||| || || || || ||| | || || | || || | || |||||||| ||
Sbjct 582007 CGTGACGAATGACCAGATCCTGCGCCGTGCTGAAGATATTTCTAAGTACTATGACGACCT 582066
Query 52339 CCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGT--CATGAA 52396
|| | || | ||||| | || || ||||| |||| | ||| || |||
Sbjct 582067 GATCGAAATGACCAACTACTGGCATCTTTTAGGTGAAGGTGACCAT-CAGGTTGCAGGAA 582125
Query 52397 A-----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTA 52445
| || ||||| | || ||||| |||| || | ||||| |||
Sbjct 582126 AAACCGTGACCGTTTCCCTGCGCGGATTAAAGAAACAGCTTTACCTCTGCCTGATGAGCG 582185
Query 52446 TCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAG 52505
||||||| | ||||| ||||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 582186 TCAATGCCCTCGAAGCCATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCGCCG 582245
Query 52506 AACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCAC 52565
| ||| || | |||||||| ||||||||||| || || | || ||||| || ||||| |
Sbjct 582246 AGCGTGAGCTGATGGAAGGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAGCCC 582305
Query 52566 TTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAG 52625
| || |||| ||||| ||||| ||||| || || || ||| || ||||||| || |
Sbjct 582306 TGCACCTGACGGGAACACAGCATATGCTAAATCTGCTGCGAAGCGGTGAAGATGATCCGG 582365
Query 52626 AAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCTG 52685
||||| || ||||||||||| ||| ||||| ||| | | ||| || | ||||
Sbjct 582366 AAATGAAAGAGATTGCTGCTGAGTGCGAGCAAGAGTGCTTTGAGCTATTCAAAAAGGCTG 582425
Query 52686 CTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAA 52745
|| | || || || || ||||| || || ||||| |||||||| ||||| || | |
Sbjct 582426 CTGAGCAGGAAAAAGAGTGGGCAGAATACCTGTTCCGTGATGGCTCGATGATCGGAATGA 582485
Query 52746 ACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTG 52805
| || | ||||| ||| ||| | |||||||| || |||||||||||||| || || |
Sbjct 582486 ATAAAGATATTCTCTGCCAATACATCGAATATATTACCAATATTCGTATGCATGCCGTGG 582545
Query 52806 GATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTT 52863
|| | || ||||||||| | ||||||| ||||| ||||||||| | |||||
Sbjct 582546 GACTGGAACTACCATTCAAAACTCGCTCTAACCCAATTCCTTGGATTAATTCGTGGTT 582603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169385801311622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |