Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq122 484 2e-132 seq83 309 1e-79 >seq122 Length=4874392 Score = 484 bits (536), Expect = 2e-132 Identities = 766/1097 (70%), Gaps = 12/1097 (1%) Strand=Plus/Plus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||||||||||| || ||||| || | || ||||||||| | |||| || |||||||| Sbjct 2807636 ATGGCTTACACCACATTTTCGCAGAATAAAAATAACCAACTGTTAGAACCGATGTTCTTC 2807695 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976 || ||| || ||||| || || | ||||| ||||| || | ||| || || ||| | Sbjct 2807696 GGACAGCCGGTAAACGTGGCGCGTTTCGACCAGCAGAAATATGACATCTTTGAAAAGCTG 2807755 Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036 || || || || | || ||||||||||| |||||||| || ||||| || | || ||| Sbjct 2807756 ATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGT 2807815 Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096 ||||| |||||| ||| || | ||||| ||||||| || | ||| || || ||| Sbjct 2807816 ATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTAT 2807875 Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156 |||| ||| || ||||| ||||||||||| | || ||| | ||||| || | | Sbjct 2807876 CAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATC 2807935 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 || || ||| |||| || ||||||||||||||| | |||||||||||||| || || Sbjct 2807936 TCGATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTCTCCGAGACTATCCACTCG 2807995 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAA 52276 ||||| || ||||| || ||||||||||| |||| ||||| | ||||||| || Sbjct 2807996 CGTTCGTACACCCATATTATTCGTAATATCGTTAACGACCCGGCGCTGGTCTTTGACGAT 2808055 Query 52277 ATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAA 52336 ||||| || ||||| || ||| | |||| || | | ||||| || || ||||| Sbjct 2808056 ATCGTCACCAACGAGCAGATCCTGTCACGCGCCAAAGATATCTCTGGCTACTACGACGAT 2808115 Query 52337 CTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCA------TGCTGG- 52389 || || | || | ||||| || | || ||||| | || ||| || Sbjct 2808116 CTGATCGAAATGACCAACTACTGGCATCTGCTGGGTGAAGGCACGCACCAGGTTGCGGGC 2808175 Query 52390 ----TCATGA-AATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCT 52444 | ||| | || ||||| | | |||| ||| |||| ||| | ||||| ||| Sbjct 2808176 AAAACCGTGACCGTCAGCCTGCGCGCGCTGAAAAAGCAGCTCTATATCTGCCTGATGAGC 2808235 Query 52445 ATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCA 52504 |||| || ||||||| || ||||| || |||||||| || ||||| || ||||| || Sbjct 2808236 GTCAACGCGCTGGAAGCGATCCGCTTTTACGTCAGCTTCGCCTGCTCTTTCGCCTTTGCC 2808295 Query 52505 GAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCA 52564 || || | | |||||||| |||||||| || ||| | || || || |||||||| Sbjct 2808296 GAGCGCGAACTGATGGAAGGCAATGCCAAAATCATTAAGCTGATCGCCCGCGATGAAGCT 2808355 Query 52565 CTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCA 52624 || || |||| || |||||||| ||||||||||| || ||||| |||| || || Sbjct 2808356 CTGCACCTGACCGGCACTCAGCATATGCTGAACCTGCTGCGCAGTGGGGAAGACGATCCG 2808415 Query 52625 GAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCT 52684 ||||||| || |||||| || ||||| ||||| ||| | | |||||| ||| Sbjct 2808416 GAAATGGCCGAGATTGCTAAAGAGTGCCGTCAAGAGTGCTACGATCTGTTCGTGCTGGCT 2808475 Query 52685 GCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTA 52744 || | || ||||| || ||||| || ||| |||||| | || || ||||||||| | Sbjct 2808476 GCCGAGCAGGAGAAAGAGTGGGCGGAATATCTGTTCAGCGGCGGTTCAATGATTGGCCTG 2808535 Query 52745 AACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTT 52804 || || | ||||| || || | || || ||||| || || |||||| | || ||| Sbjct 2808536 AATAAAGATATTCTGTGGCAGTACATTGAGTACATCACCAACATCCGTATGAACGCTGTT 2808595 Query 52805 GGATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTG 52864 || | ||| || || ||| | |||||||| |||||||| || | ||| || Sbjct 2808596 GGTCTGGATCTGCCGTTTAAAACCCGCTCGAACCCGATCCCGTGGATCAACTCGTGGCTG 2808655 Query 52865 AATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGG 52924 || ||| || ||||||||||| |||||| ||| | || || ||||||||||| Sbjct 2808656 GTGTCCGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGCTCTTACCTGGTCGGA 2808715 Query 52925 CAAATTGACTCCGAAGT 52941 || || ||||| ||||| Sbjct 2808716 CAGATCGACTCTGAAGT 2808732 >seq83 Length=912621 Score = 309 bits (342), Expect = 1e-79 Identities = 501/718 (70%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 52160 ATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGT 52219 || || ||| |||| || ||| ||||||||||| | |||||||| || || || |||||| Sbjct 581888 ATCCCGGAACTGGAAACATGGGTTGAAACCTGGGCGTTCTCCGAAACGATCCACTCACGT 581947 Query 52220 TCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTA-TCTTTGATGAAAT 52278 ||||| || || || ||||||||||| || | ||||| || || | || || || || Sbjct 581948 TCTTACACTCATATTATTCGTAATATCGTGAACGACCCG-GCTCTAGTATTCGACGATAT 582006 Query 52279 CGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACT 52338 ||| || || || || ||| | || || | || || | || |||||||| || Sbjct 582007 CGTGACGAATGACCAGATCCTGCGCCGTGCTGAAGATATTTCTAAGTACTATGACGACCT 582066 Query 52339 CCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGT--CATGAA 52396 || | || | ||||| | || || ||||| |||| | ||| || ||| Sbjct 582067 GATCGAAATGACCAACTACTGGCATCTTTTAGGTGAAGGTGACCAT-CAGGTTGCAGGAA 582125 Query 52397 A-----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTA 52445 | || ||||| | || ||||| |||| || | ||||| ||| Sbjct 582126 AAACCGTGACCGTTTCCCTGCGCGGATTAAAGAAACAGCTTTACCTCTGCCTGATGAGCG 582185 Query 52446 TCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAG 52505 ||||||| | ||||| ||||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 582186 TCAATGCCCTCGAAGCCATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCGCCG 582245 Query 52506 AACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCAC 52565 | ||| || | |||||||| ||||||||||| || || | || ||||| || ||||| | Sbjct 582246 AGCGTGAGCTGATGGAAGGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAGCCC 582305 Query 52566 TTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAG 52625 | || |||| ||||| ||||| ||||| || || || ||| || ||||||| || | Sbjct 582306 TGCACCTGACGGGAACACAGCATATGCTAAATCTGCTGCGAAGCGGTGAAGATGATCCGG 582365 Query 52626 AAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCTG 52685 ||||| || ||||||||||| ||| ||||| ||| | | ||| || | |||| Sbjct 582366 AAATGAAAGAGATTGCTGCTGAGTGCGAGCAAGAGTGCTTTGAGCTATTCAAAAAGGCTG 582425 Query 52686 CTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAA 52745 || | || || || || ||||| || || ||||| |||||||| ||||| || | | Sbjct 582426 CTGAGCAGGAAAAAGAGTGGGCAGAATACCTGTTCCGTGATGGCTCGATGATCGGAATGA 582485 Query 52746 ACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTG 52805 | || | ||||| ||| ||| | |||||||| || |||||||||||||| || || | Sbjct 582486 ATAAAGATATTCTCTGCCAATACATCGAATATATTACCAATATTCGTATGCATGCCGTGG 582545 Query 52806 GATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTT 52863 || | || ||||||||| | ||||||| ||||| ||||||||| | ||||| Sbjct 582546 GACTGGAACTACCATTCAAAACTCGCTCTAACCCAATTCCTTGGATTAATTCGTGGTT 582603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169385801311622