Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq93 100 3e-16 seq212 89.7 6e-13 >seq93 Length=974399 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || || || || | ||||| |||| || |||||||| || || | ||||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 | | ||||||||| ||| ||| || ||||||||||| ||||||||| || || | Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 126186 CAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCAAACCACTTCATCGCCCACTGC 126244 ||| | ||||||||||| | | |||| || | ||| ||||||||| ||||| | Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAG-CAATCCACTTCATGGCCCAATCG 914805 Query 126245 GCCTTTTTCTCGATACACGGGA 126266 ||||| |||| | ||| |||| Sbjct 914806 GCCTTCTTCTTCACACATGGGA 914827 >seq212 Length=676889 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 ||||| || || ||||||| || ||||| |||||| || ||| ||||| |||||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 172027 || ||| || || | | || || ||||||||||| || ||| ||||||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTCACCA 82624 Query 172028 TGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCC 172087 || ||||| || || | || || || | | || ||||| ||||| || | || | | Sbjct 82625 TGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTTC 82684 Query 172088 TTGAGGTTCTTGTGGAAGCACGCATACATGACCT 172121 ||| ||| | | || || | ||| || |||| Sbjct 82685 TTGTCATTCCTTTTTAAACAAGTATAAATTACCT 82718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597306834680040