Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq4080 367 5e-97 seq1959 107 8e-19 seq122 102 3e-17 seq620 84.2 9e-12 >seq4080 Length=6683 Score = 367 bits (406), Expect = 5e-97 Identities = 493/678 (73%), Gaps = 10/678 (1%) Strand=Plus/Minus Query 16711 AACACCGAGGTTGTCGGGCATATGGCACTTGAGGCAATGCGTCAGGGTGTGAAGACGTGC 16770 || || || || || || |||||| | ||||| || ||| || || || || || || Sbjct 6401 AAAACGGAAGTGGTAGGCCATATGACCCTTGAAGCGATGAAGCATGGCGTTAAAACCTGT 6342 Query 16771 ATCGCGTCACTTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTACCCGTCAGGCGACG 16830 |||| ||||||||| | ||||| || | || ||||||||||| |||||||| || Sbjct 6341 GTCGCCTCACTTGAGTTAAAGCCAGGCCAATTGCTCAAGCGCCTTACTCGTCAGGCTACC 6282 Query 16831 TGCTGCAAGATGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAATTTTATGACGAAAGA 16890 ||| || | || || | |||||||| || || |||| ||||| || || | Sbjct 6281 TGCGTTAAACTCCCACCGAAGAACGAAATTGAATCAGCGTTTAGTTTTTACGATGACCGG 6222 Query 16891 CTTTGGGTGTTTGGCCTGACCGGAACGGCGAAAGCCGACAGGCTGATCGAAATATTCGAC 16950 | ||| | ||||| || || ||||| || ||||||||| | || | || |||||||| Sbjct 6221 TTATGGTTATTTGGACTAACGGGAACCGCTAAAGCCGACCGACTTCTTGAGATATTCGAG 6162 Query 16951 TACGCTCGCCGCCGATACGGTATCCAGTTATTCATCATCGACAGCCTGATGAAATGTGGC 17010 ||||| | || ||||| | ||||||||||||| |||||||| |||||||| ||| Sbjct 6161 TACGCGAGAAAGCGTTACGGCGTGAAGTTATTCATCATTGACAGCCTAATGAAATGCGGC 6102 Query 17011 ATAGGCGACGATGACTATAACGGGCAGAAGGCGTTTGTTGACTCGATTTGCGACTTCAAA 17070 || || ||||||||||| |||| ||||||||| |||||||| | | || |||||||| Sbjct 6101 ATTGGTGACGATGACTACAACGCGCAGAAGGCTTTTGTTGATGCTGTCTGTGACTTCAAG 6042 Query 17071 ACACAAAACAAACTCCCCACGTCATTCTCGTTACTCACTCGCGAAAAGGAGACAGCGAAG 17130 | || ||||||| ||| || || ||||| |||||| || ||||| |||||||||| Sbjct 6041 A-ACCGAACAAAC-AGCCATGTAATACTCGTAACTCACAGTCGGAAAGGTGACAGCGAAG 5984 Query 17131 AAAAACCAACCGGGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAGACCTGACAGACA 17190 | || || || || || |||||||| ||||||||||| |||| || ||||| ||||||| Sbjct 5983 AGAAGCCTACTGGAAAGATGGACGTGAAAGGCTCTGGTTCGATTACTGACCTTACAGACA 5924 Query 17191 ACCTTTTCATCATCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGAGAGTTCAGA--- 17247 |||| || ||||||||||| ||||| || || |||| || |||||| || || | Sbjct 5923 ACCTGTTTATCATCTGGCGAAACAAAGCCCGTGAGAAGGCCATACAGA-AG--CAAAACC 5867 Query 17248 GTGGTGAAAAGATGTCAGAGAAGGACGAA-CAGCTACTGGCATCTCCGGCATCTGTTTTG 17306 | |||| || | || || ||| || |||| ||| |||| ||||| | | Sbjct 5866 TTAATGAAGCATTGACCGACAAAGACCAATCAGC-ACTCAGCGCTCCTGCATCCATGCTC 5808 Query 17307 ATGCTTGAAAAACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCGTTGTTCCTTGAC 17366 ||||| || ||||| || ||||| ||||| ||||||||||| | ||| | | ||| || Sbjct 5807 ATGCTAGAGAAACAGCGCAACGGGGAAGGGTGGGAAGGTGGCATACCGCTATACCTAGAT 5748 Query 17367 GAGCAATCGCACCAGTTC 17384 || | ||||||||| ||| Sbjct 5747 GACCCATCGCACCAATTC 5730 Score = 100 bits (110), Expect = 1e-16 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 15433 CTGCCGTACAAAGACATCAACGAATGCCTGATGAACGGTGTTACCGAGGATGAAAT-CTG 15491 || |||||||||||||||||||| ||||| | | || | || || || | | || Sbjct 6653 CTACCGTACAAAGACATCAACGAGTGCCTAAAGGCTGGAATGACTGACGAGCAGGTACTT 6594 Query 15492 GCAGTACATCGGCACGGCATCCTAT-TTCGATCCTGAAGAACTCTACAGTGCGCGAGAGT 15550 | |||| || |||| | || ||||| || ||||| || ||||| || |||||| Sbjct 6593 GATGTACT--GGAACGGGCTGAGATGTTCGACCCCGAAGAGCTTTACAGCGCCAGAGAGT 6536 Query 15551 TTTACCAGGACACTATCAACGCTTTCTACGGCAAGAAGCAGTATCTGTTTAATCCACCGT 15610 | ||||| ||||| | | ||||||||||| || |||| || || || |||| | Sbjct 6535 TCTACCAAGACACCGTTGATGCTTTCTACGGTCAGGAGCAATACCTATTCCCGACACCTT 6476 Query 15611 GGGAATCTCTGGCAGATAAATTCCAGTTCCGTGAGGCCGAGTTGACGCTGGTCAATGGTG 15670 || | | || | ||| ||| |||||| || || ||| | || |||||||| || | Sbjct 6475 GGTCAACGCTAAACGGTAACTTCATGTTCCGCGAAGCAGAGCTAACACTGGTCAACGGGG 6416 Query 15671 TGAACGGTCACGGAAA 15686 | ||||||||||| || Sbjct 6415 TAAACGGTCACGGGAA 6400 >seq1959 Length=43063 Score = 107 bits (118), Expect = 8e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 22824 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 22883 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 22884 TCCAGCAAGGGCCACCA 22900 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Score = 87.8 bits (96), Expect = 7e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29403 ACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCG 29462 || || || ||||||||| |||||||| ||||||||||| ||||| ||||| ||| | Sbjct 9628 ACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACA 9687 Query 29463 AGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 29522 | ||||||||| ||||| | ||| || || |||| || || ||||| | ||| Sbjct 9688 AAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGC 9747 Query 29523 CGTAAGCGCCTGCGGATC 29540 || ||||| |||| ||| Sbjct 9748 CGCAAGCGGTTGCGCATC 9765 >seq122 Length=4874392 Score = 102 bits (112), Expect = 3e-17 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 60155 CTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCGACCTCCGTCTGACCGGTTCGGAT 60214 ||||||||||| | ||| || | | || |||| ||||| | ||||| ||||| Sbjct 2888484 CTCTTACTTCTGCGGGTCGCAGGCCATAAACGCAGCCACCTCTGCGATACCGGCGCGGAT 2888543 Query 60215 TCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACT-ATGACGGTTAAACAGA 60273 |||||||| || ||||| |||||||| ||||| || | || | | || | |||| Sbjct 2888544 CCGCACCTCACACAGGTCCTTCCTCGTCACCAG-AACGGCGCTGAGCGCCGTCATGCAGA 2888602 Query 60274 TGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTT 60333 ||| || | |||||| || |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 2888603 TGATAATAATGGCGATAAAGATCGCCTTGTGCTGTTTCAT-GGTTGC-TCTCCTTGTCTT 2888660 Query 60334 TCGGCACGTAAGAGGCTAACCT 60355 || | |||||| |||||||| Sbjct 2888661 GCGACGTGTAAGACGCTAACCT 2888682 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 22809 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 22865 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 22866 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 22903 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 >seq620 Length=44282 Score = 84.2 bits (92), Expect = 9e-12 Identities = 108/149 (72%), Gaps = 10/149 (7%) Strand=Plus/Plus Query 13689 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 13748 ||||||||| | | |||| ||||||||||| | || || || ||||| || | ||| Sbjct 6818 ATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCCGCTTCGGAAA 6877 Query 13749 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTG-----GCCTT 13803 ||||||| | || || || ||||| |||| ||| || ||||||||||| ||||| Sbjct 6878 TTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTGGCCGAGCCTT 6937 Query 13804 CATATCAACATGTCGCTGACCAGTGTGAG 13832 | || || |||| || ||||||||| Sbjct 6938 CGTAACA-----TCGCCGATCAGTGTGAG 6961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202723724853508