Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10 104 3e-17 seq275 96.9 4e-15 seq95 96.9 4e-15 seq535 95.1 1e-14 seq118 95.1 1e-14 seq187 93.3 5e-14 seq5 93.3 5e-14 seq42 87.8 2e-12 >seq10 Length=3591014 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 1319417 GAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1319358 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || |||||||||||||||||||||| Sbjct 1319357 CTGACCACTATACTACCGAGGATTG 1319333 >seq275 Length=398669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 |||||||| ||||| || | ||| || ||| | || || |||||||| ||||| || || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGC 42139 || ||||||||||| | || | | ||||||||| ||| |||| | ||||| || | Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTCTC 170605 Query 42140 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 | | ||| | ||| || || | ||||| ||||| || || || || || ||||| Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 42200 GATTTGCATT 42209 ||| |||||| Sbjct 170544 GATCTGCATT 170535 >seq95 Length=874464 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | ||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 215442 AAAAATATACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 215383 Query 57058 TCACCACTATACTACCGAGGATT 57080 | |||||||||||||||| |||| Sbjct 215382 TGACCACTATACTACCGAAGATT 215360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 228089 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 228148 Query 57072 CCGAGGATTG 57081 |||| ||||| Sbjct 228149 CCGAAGATTG 228158 >seq535 Length=141774 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 23109 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 23168 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 23169 TACTACCGAGGA 23180 >seq118 Length=894290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||| ||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 432547 AAAAATACTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 432490 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||||||| ||||| Sbjct 432489 TGACCACTATACTACCGAAGATTG 432466 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| ||||| ||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 445085 AAAATACTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 445142 Query 57059 CACCACTATACTACCGAGGATTG 57081 |||||||||||||||| ||||| Sbjct 445143 GACCACTATACTACCGAAGATTG 445165 >seq187 Length=679046 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 124190 AAAAAGTAACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 124249 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||||||| ||||| Sbjct 124250 TGACCACTATACTACCGAAGATTG 124273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 124364 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 124423 Query 57072 CCGAGGATTG 57081 |||| ||||| Sbjct 124424 CCGAAGATTG 124433 >seq5 Length=3583357 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| ||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 2754566 TGAAAAAGGAACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2754625 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| |||||||||||||||| ||||| Sbjct 2754626 ACTGACCACTATACTACCGAAGATTG 2754651 >seq42 Length=1911596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 1671006 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 1671065 Query 57072 CCGAGGAT 57079 |||| ||| Sbjct 1671066 CCGAAGAT 1671073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543170273227920