Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3962 120 3e-22 seq43 118 1e-21 seq275 102 8e-17 seq45 95.1 1e-14 seq19 91.5 1e-13 >seq3962 Length=6517 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||| || || | || ||| || | || |||||||||||||| ||| | | Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || ||||||||||| || ||||| || || || || || ||||| ||| ||| || Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || ||| || || || |||| || | |||||||||||| | ||| || || | Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 64434 AAATTTGCATT 64444 |||| |||||| Sbjct 6108 AAATCTGCATT 6098 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | || |||||||| || |||||||| || | Sbjct 414 ACCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 355 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || || ||||||||||| | || || |||||||| || || || Sbjct 354 CAAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGG 295 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || || || ||| || ||| | | ||| || || || Sbjct 294 GATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAAC 235 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| || | || || |||||||| ||||| Sbjct 234 CTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 >seq43 Length=2082672 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | | || ||||| | || || || || || || ||||| || | Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||||||||||||||| ||| | || | |||||||| || || || Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| ||||| ||||| |||||| ||| | | |||| || || ||| Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||||||||| || | || || || || || |||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || ||||| ||||| || | | || || | ||| Sbjct 901057 AGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCT 900998 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| |||||| | || | | ||||||||| || || || || ||||| || Sbjct 900997 TCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCC 900938 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | | ||| || || || || | ||| | |||| Sbjct 900937 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 900878 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 900877 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq275 Length=398669 Score = 102 bits (112), Expect = 8e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||||||||| |||| | |||||| | || ||||||||||| || ||| ||| Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 | || ||||||||||| || || |||||||| || || || ||||| Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTT 170620 >seq45 Length=1811775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 154584 ACAGACGCCAAGTTGCAAACGGCAATTTCT-TC----AGAACTACTGTATTGCACAATTT 154638 || || ||||| || ||||| ||||||||| || || | |||| | |||| | Sbjct 849878 ACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAA-----CAATCT 849932 Query 154639 CTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGC 154698 | | ||| | ||| |||| | ||| || || | || | |||||| |||||| ||||| Sbjct 849933 CAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTTGC 849992 Query 154699 ATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT 154753 | || ||||||||||| ||||| || ||||| ||||| ||||| | |||||||| Sbjct 849993 AAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAAT 850047 >seq19 Length=2947477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| ||||| ||||| || | | || | | ||||||||||||||||| || | | Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||||||||| || || || ||||| || || || || || ||| ||| || Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | | ||| || || || || | ||| | ||||||||| || | || || |||| Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 64434 AAATTTGCATTTT 64446 | || ||||| || Sbjct 340739 AGATCTGCATGTT 340751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499605684057720