Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq122 150 5e-32 >seq122 Length=4874392 Score = 150 bits (166), Expect = 5e-32 Identities = 240/340 (71%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 32826 ACCGCCAAGCATCTGCATGACGCCACCCATTTGTGGAATGACAATCTCAGTGGTGTATTT 32885 |||||| |||||||||||| ||| || | | || |||| || |||||||| || Sbjct 4802364 ACCGCCCAGCATCTGCATGGTGCCGCCAACGTT---AACCACAACTTCGGTGGTGTACTT 4802308 Query 32886 GTCCACGCCG--CTGCTGTCAGTCCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACC 32943 || ||||| ||| ||||||||| ||||| || | ||| ||||| ||||||||| Sbjct 4802307 CTCAACGCCAGCCTG--GTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACC 4802250 Query 32944 TGCGACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACT 33003 || || |||||||| || || || || || ||||| || | || ||||| | ||||| Sbjct 4802249 TGAGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACG 4802190 Query 33004 CGATGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGAT 33063 || ||||||||||| | ||||| |||| || || |||||||| ||| || || Sbjct 4802189 CGGTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAG 4802130 Query 33064 GTTGCAACAGAAAGGTTCGCAATTGCAGAGCCTGATGCTGAA--TATTTAACTTCAGGGT 33121 || || | || | ||| |||| ||| ||| || | | | || |||||| |||| Sbjct 4802129 GTAGCCAGAGTGATGTTGGCAACGGCACCGCC--ATTCGGCATGTAGCGAACTTCCGGGT 4802072 Query 33122 CATTTCCGAGAGTGCCGACAATGATTACTTTATTTACGCC 33161 | | || ||| | ||||| | |||||||| |||||||| Sbjct 4802071 CCTGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 4802032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144030887176078