Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq122 461 8e-125 >seq122 Length=4874392 Score = 461 bits (510), Expect = 8e-125 Identities = 674/943 (71%), Gaps = 14/943 (1%) Strand=Plus/Plus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 |||||||||||||||| | | |||||||| || ||| ||||||||||| ||||| Sbjct 3304324 CGCCATCAACTGGAACAACATCGAAGACGAGAAAGATCTGGAAGTGTGGAACCGCCTGAC 3304383 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCA 156053 || |||||||||||||||||| ||| | ||| |||| || || | | | ||||| || Sbjct 3304384 CAGCAACTTCTGGCTGCCGGAAAAGGTACCGCTGTCTAACGATATTCCGGCGTGGAACTC 3304443 Query 156054 GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGA 156113 |||| | || |||| | | | ||||| || |||||||||||||||||| |||| || Sbjct 3304444 CCTGAATGCCGATGAGCAACAGCTGACCATCCGCGTGTTCACCGGCCTGACGCTGCTCGA 3304503 Query 156114 CACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGA 156173 ||||||||| |||| ||||||| |||| || | || || | || ||||| || Sbjct 3304504 TACCATCCAGAACACCCTCGGCGCTCCGGCGCTGATGGCCGATGCGCTGACGCCGCATGA 3304563 Query 156174 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGC-GTGCACGCACGCAGCTA---CT 156229 ||||| ||| | |||||| || ||||| ||| ||||| || ||| || || Sbjct 3304564 AGAGGCCGTGATGTCGAACATCAGCTTTATGGA-AGCGGTGCATGCCCGCTCATACAGCT 3304622 Query 156230 CGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGG 156289 || |||||||| ||||||||| ||||| || | || ||||| | | |||| | Sbjct 3304623 CG---ATCTTCTCCACGCTGTGCCACACCAGCGATGTTGATGCCGCCTACGCCTGGAGCG 3304679 Query 156290 AGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCT-CAGCTACTACAACGGTGAC 156348 | ||||| || |||||| ||||| |||||| | || |||| ||||| ||| || Sbjct 3304680 AAGAGAATCCCCCGCTGCAGCGCAAGGCCGAGATCATTCTGCAGC-ACTACTACGAGAAC 3304738 Query 156349 GACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 |||||||| ||| ||| ||||| | | | || || |||||||||||| |||| Sbjct 3304739 GACCCGCTAAAGAAGAAGATCGCCAGCGTGTTCCTCGAATCGTTCCTGTTCTACTCCGGC 3304798 Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468 |||||||||||||||| ||||||| || |||||||| || ||||||||||| ||||| Sbjct 3304799 TTCTACCTGCCGATGTACTGGTCGAGCCGCGGCAAGCTGACTAACACCGCCGATCTGATC 3304858 Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528 || || || ||| || ||||| || ||||| ||||||||||||||||||| ||||| Sbjct 3304859 CGTCTGATTATCAAAGATGAGGCGGTTCACGGTTACTACATCGGCTACAAGTATCAGAAA 3304918 Query 156529 GGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTG 156588 | |||||| || ||||| | || | |||| || | | | | || ||| ||| Sbjct 3304919 GCCCTGGAAAAAGAGACGCCGCAGCGTAAAGAGGAGCTGCAACAGTTCGCCGTTGAACTG 3304978 Query 156589 CTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGC 156648 ||| | | ||||| || || || || || ||| | | || |||| | | |||| Sbjct 3304979 CTGCTGGCGCTGTATGAAAATGAAATTGAATATACCGATGCGCTGTACGCAGGCGTCGGC 3305038 Query 156649 CAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTG 156708 | || || ||||| |||||| ||| ||||| | |||||||| ||| |||||| Sbjct 3305039 TGGCAGGAAGAGGTGAAAAAGTTCTTGCATTACAATGCTAACAAGGCGCTGATGAACCTC 3305098 Query 156709 GGCTACGACGCGCTGTTCAGCCGCAGCGACTG--CGACGTCAACCCGGCCATCCTGAGCG 156766 |||||||| ||||||||| || | | || || ||| || |||||||| ||||| | Sbjct 3305099 GGCTACGAGGCGCTGTTC-CCCTCTGAGA-TGACCGATGTTAACCCGGCTATCCTCTCGG 3305156 Query 156767 CGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACG 156826 |||||||||| | || || ||||||||||||||||| || || ||| | | || | Sbjct 3305157 CGCTGTCGCCAAACGCCGATGAAAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCTATG 3305216 Query 156827 TCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTT 156869 | |||| || | || | |||||||| || |||||| |||| Sbjct 3305217 TGATGGGTAAAGCGGTCGATACCGAAGATGAAGACTGGAACTT 3305259 Score = 145 bits (160), Expect = 8e-30 Identities = 206/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 161954 TGCTGTGGGAGACCTTCGGCGGCACCACCAACGCCGAGGGCTACCGCGAGCTGGACCCGC 162013 |||||||||||| |||||||||||| ||| ||| ||||||| | ||||||||||| Sbjct 3983545 TGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGCTACAAGGTGCTGGACCCGC 3983486 Query 162014 ACATCGGTGCCATCTACGGCGACAGCATCACGCTCGATCGCGCACAGGCGATCCTGGCCA 162073 || | ||| |||||||||||| || || ||||| || || | ||||||| Sbjct 3983485 ACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATCCTGAGTC 3983426 Query 162074 ACCTGCAGCGTCAGGGCTTCGCTGCCAGTAACGTCGTGTTCGGCGTGGGCAGCTACACGT 162133 ||| || | ||||| || ||| || || ||||||||||| || || |||| Sbjct 3983425 GTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACGT 3983366 Query 162134 ACCAGTACAACACCCGCGACACGTTCGGTTCAGCAATGAAGGCGACGT-GGGCGCAGGTC 162192 ||||||||||||| || ||||| || |||| || ||||| ||||||| |||| || | Sbjct 3983365 ACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGTATGGCGAAGTGC 3983306 Query 162193 AACGGCAAGGGCGTGAACCTGTTCAAGGACCCGATCACCGACGACGG 162239 | | | ||||||| | | ||||| | |||| |||||| |||| Sbjct 3983305 ACGGAGAGGGGCGTG-AGATCTTCAAACAGCCGAAAACCGACAACGG 3983260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526557173927760