Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq907 150 1e-31 seq40 123 2e-23 seq33 96.9 3e-15 seq4 96.9 3e-15 seq11 87.8 1e-12 seq2810 82.4 6e-11 seq1729 82.4 6e-11 >seq907 Length=24313 Score = 150 bits (166), Expect = 1e-31 Identities = 191/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 108330 CGCGCACGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGC 108389 |||||| | | |||| | || ||||| || ||||| || ||| | ||| | |||| || Sbjct 21074 CGCGCAAATCGGCGGGCTAGGCGTGACAGCAGGCGTGCACCGGCTCTGGTCGCACAGGGC 21015 Query 108390 CTACAAGGC-CACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGAC 108448 ||||||||| | ||| || | | || |||||||| | | |||||||||||| |||| Sbjct 21014 CTACAAGGCGCGCCGGCCGCTGC-GGTACCTCCTGGCGGTGTTCTTCTCGGTGGCCGGAC 20956 Query 108449 AGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGA 108508 |||||||||||| | | ||||| | ||| ||| | || |||||||||| | | || ||| Sbjct 20955 AGAACACCATCCTGAACTGGGTCCGCGACCACCGAGTGCACCACAAGTTCACCGAGACGG 20896 Query 108509 CGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGA 108568 || ||||| |||||||| || |||| |||| ||| ||||| || |||||| | Sbjct 20895 ACGCGGACCCGCACAACGCGAAGCGGGGCTTCTTCTTCGCGCACTGCGGCTGGCTCCTCC 20836 Query 108569 TGACCAAGGACCCCGACGTG 108588 || ||| |||| |||||| Sbjct 20835 AGAGGAAGCACCCGGACGTG 20816 >seq40 Length=2038722 Score = 123 bits (136), Expect = 2e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 108343 GGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACC 108402 ||| |||| |||||||| ||| || || ||||| | ||| |||||||||||| Sbjct 2018018 GGGCTCGGCGTGACGGCGGGCTGTCACCGCCTGTGGTCGCACCGCTCCTACAAGGCCAGG 2017959 Query 108403 GCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCG 108462 ||| | | || || || || |||||||| | || || ||||||||||||| | Sbjct 2017958 ATGCCGCTGCGCGTCGCGCTCGCCCTCTGCTTCTCCATTGCCGGCCAGAACACCATCCTG 2017899 Query 108463 CAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACAC 108522 ||||||||| ||| ||| | || |||||||||| | || ||| |||||||| ||| Sbjct 2017898 GAGTGGGTGCGCGACCACCGCGTCCACCACAAGTTTACCGAGACGGATGCCGACCCCCAC 2017839 Query 108523 AACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582 |||| || | || |||| ||| ||||||| || ||||| ||| || ||| |||| Sbjct 2017838 AACGTGAAGCGCGGCTTCTTCTTCGCGCACGTCGGCTGGCTGATGCAGAGGAAGCACCCT 2017779 Query 108583 GACGTG 108588 || ||| Sbjct 2017778 GAAGTG 2017773 >seq33 Length=2016121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 108840 CAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGG-CGTTGGCTCTCGGCGAGGGAT 108898 || || ||| | ||| | || ||| | || |||||| ||| | || |||||||||| | Sbjct 460634 CAGGAGCATCTCCCCGACCGAGAACTACTTCGTGGCGCACGTCGCCT-TCGGCGAGGGCT 460692 Query 108899 GGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGACT 108958 ||||||||||||||||||| ||||||| ||||||||||| |||||| |||| || ||| Sbjct 460693 GGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCGGCCGAGCTGGGCGACTACT 460752 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| | || ||||| |||||||||||||||||||| ||||||| ||||||||||| ||| Sbjct 390602 GCTATGGGTGAGGGCTGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCGGCC 390543 Query 108943 GAGTTGGGGAACGAC 108957 ||| | || ||| || Sbjct 390542 GAGCTCGGCAACTAC 390528 >seq4 Length=4567600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 108757 GCCGTTCTGAGGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCAC 108816 ||| | ||| | ||| ||||| ||||| || || ||||| ||||| || ||| ||| Sbjct 2745724 GCCATGCTGCGCTACACCCTCTCCCTCCACGGCACCTGGCTCGTCAACTCCCTGGCCCAC 2745783 Query 108817 -ATGTACGGCGACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGC 108875 | || ||||||||| || | ||||||| ||| | | | || ||| | ||| | Sbjct 2745784 TACGT-CGGCGACCGCCCCTACGACAAGTCCATCGCCGCCCGTGAGAACCTCATCGTGTC 2745842 Query 108876 GGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAA 108935 | || || |||||||| | ||||||||||||||||| ||||||| |||||||| Sbjct 2745843 CCTGGGCGCCCTGGGCGAGGGCTACCACAACTACCACCACGTCTTCCCCTGGGACTACAA 2745902 Query 108936 GGCCGCCGAGTTGGG 108950 | |||||||| |||| Sbjct 2745903 GACCGCCGAGCTGGG 2745917 Score = 95.1 bits (104), Expect = 9e-15 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 108349 GGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCC 108406 || ||| | |||||||| || || ||||| ||||||| ||||||||||||| | |||| Sbjct 2745231 GGCGTGTCCGCCGGCGTGCACCGCCTGTGGTCCCACAAGGCCTACAAGGCCAGGCTGCCC 2745290 Query 108407 CGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGT 108466 | | ||| || |||| | | | | | | | || || ||| ||||| | ||| Sbjct 2745291 C--TGAGGATGCTCCTCACCTTCTTCAACACCATCGCCTTCCAAAACTCCATCTGGGAGT 2745348 Query 108467 GGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAAC 108525 || | ||| ||| | || |||||||||| | | || | |||| |||||||| |||| Sbjct 2745349 GGACCCGCGACCACCGCGTCCACCACAAGTTCACCGAGACCGAC-GCCGACCCCGTCAAC 2745407 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 ||| || | || |||| ||| | ||||| || ||||| || | ||| |||||||| Sbjct 2745408 GCCGACCGCGGCTTCTTCTTCGCCCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCCGAC 2745467 Query 108586 GT 108587 || Sbjct 2745468 GT 2745469 >seq11 Length=3525032 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACA 108523 |||||||| || || | || |||||||||||||||||||| ||| |||||||| |||| Sbjct 524164 GTGGGTGCGAGACCATCGCGTCCACCACAAGTACTCTGACACAGAC-GCCGACCCTCACA 524222 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 | ||| |||| | | ||||||||| | || |||||| || || ||| |||||| Sbjct 524223 ATTCCACGCGGGGTCTGTTCTTCTCGCACATTGGCTGGCTCCTGCTGCGCAAACACCCCG 524282 Query 108584 ACGTG 108588 ||||| Sbjct 524283 ACGTG 524287 >seq2810 Length=9921 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| Sbjct 378 TGGCGATCGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCCTGGGACTACCGCACCG 437 Query 108941 CCGAGTTGGGGAACG 108955 |||| |||| |||| Sbjct 438 GCGAGCTGGGCAACG 452 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| Sbjct 5013 TGGCGATCGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCCTGGGACTACCGCACCG 5072 Query 108941 CCGAGTTGGGGAACG 108955 |||| |||| |||| Sbjct 5073 GCGAGCTGGGCAACG 5087 >seq1729 Length=4191 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-C 108506 ||||||||||| || | |||||| |||||| |||| |||||||| | | || | | Sbjct 2682 CAGAACACCATACCCAATTGGGTGAGGGATCACCGGGTGCACCACAAATTTACCGAGACC 2741 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 ||| || |||||||| |||||||| || || || | ||| | |||||||| ||||| || Sbjct 2742 GAC-GCAGACCCACATAACGCCAAGAGAGGATTTTTCTTCGCTCACGTGGGCTGGCTTAT 2800 Query 108567 GATGACCAAGGACCCCGACGTG 108588 | |||| |||| || ||| Sbjct 2801 GCAACGCAAGCACCCGGAGGTG 2822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381743659162872