Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq275 86.0 6e-12 seq93 82.4 8e-11 >seq275 Length=398669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 ||||||||||||||||| || || ||| ||||| || || || || | | | || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTC 138545 |||||||| ||||| || || || ||||| ||||| ||| |||| | ||| | | || Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACGTTCTC 170605 Query 138546 CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 | | ||| | | || ||||| | || | ||||| ||||| || ||||| ||||| Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 138606 AATCTGCAT 138614 |||||||| Sbjct 170544 GATCTGCAT 170536 >seq93 Length=974399 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 || ||||| | ||||| ||||||||||| | || | |||||| | || ||||| Sbjct 914813 AAGAAGGCCGATTGGGCCATGAAGTGGATTGCTCATGAGTCTGCCACGTTTGCTGAGCGA 914754 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | | ||||| || || ||||| | || || || || |||||||| ||||| || Sbjct 914753 GTAATTGCCTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGAAGCTTTGCTGCCATTTTC 914694 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | |||| | || ||| | ||||| || || || |||||||| |||||||| || || Sbjct 914693 TGGCTTAAGAAGAGAGGGCTTATGCCAGGTCTTACCTTCAGCAATGAGTTGATTTCACGA 914634 Query 52521 GACGA 52525 || || Sbjct 914633 GATGA 914629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496223548857360