Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq4080 504 2e-138 seq1959 82.4 2e-11 >seq4080 Length=6683 Score = 504 bits (558), Expect = 2e-138 Identities = 690/958 (72%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 35443 CTCGGTGAACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTG 35502 || ||||| |||||||| |||| | ||| ||| ||||||| |||||||| ||||| Sbjct 6683 CTTGGTGAGCATCGCTGTATGTTGGTCAAACTACCGTACAAAGACATCAACGAGTGCCTA 6624 Query 35503 ATGAACGGCGTCGCTGAGGATGAAAT-CTGGCAGTACATCGGTACAGCGTCATAT-TTCG 35560 | | || | |||| || | | || | |||| || || | | | || |||| Sbjct 6623 AAGGCTGGAATGACTGACGAGCAGGTACTTGATGTACT--GGAACGGGCTGAGATGTTCG 6566 Query 35561 ACCCCGAAGAGCTTTACAGCGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTCTACG 35620 ||||||||||||||||||||||| | ||||| || || |||||| | |||||||||||| Sbjct 6565 ACCCCGAAGAGCTTTACAGCGCCAGAGAGTTCTACCAAGACACCGTTGATGCTTTCTACG 6506 Query 35621 GCAAGCAGCAGTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCC 35680 | || |||| || || || |||| ||| |||||| |||||| ||||| Sbjct 6505 GTCAGGAGCAATACCTATTCCCGACACCTTGGTCAACGCTAAACGGTAACTTCATGTTCC 6446 Query 35681 GTGAGGCGGAGTTAACGCTTGTCAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCG 35740 | || || ||| |||| || ||||| || || ||||||||||| |||||||| || || | Sbjct 6445 GCGAAGCAGAGCTAACACTGGTCAACGGGGTAAACGGTCACGGGAAAACGGAAGTGGTAG 6386 Query 35741 GGCATATGGCACTTGAGGCCATGAGACAGGGGATAAAAACATGCGTCGCATCGCTTGAAC 35800 | |||||| | ||||| || |||| || || | ||||| || ||||| || ||||| Sbjct 6385 GCCATATGACCCTTGAAGCGATGAAGCATGGCGTTAAAACCTGTGTCGCCTCACTTGAGT 6326 Query 35801 TGAAGCCCGGGATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGTTGCAAAATGCCGC 35860 | ||||| || |||| || ||||| || || ||| |||| || ||| | || | Sbjct 6325 TAAAGCCAGGCCAATTGCTCAAGCGCCTTACTCGTCAGGCTACCTGCGTTAAACTCCCAC 6266 Query 35861 C--AGTTCTGGAAATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGG 35918 | || | ||||| |||||||| |||| ||||||||||||||| | ||||||||||| Sbjct 6265 CGAAGAAC--GAAATTGAATCAGCGTTTAGTTTTTACGATGACCGGTTATGGTTATTTGG 6208 Query 35919 CCTGACAGGTACGGCCAAGGCGGAACGCCTGATTGAAATTTTCACATATGCCAGACGGCG 35978 || || || || || || || || || || |||| || ||| || || ||| ||| Sbjct 6207 ACTAACGGGAACCGCTAAAGCCGACCGACTTCTTGAGATATTCGAGTACGCGAGAAAGCG 6148 Query 35979 ATACGGCATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGGATTGGCGATGACGA 36038 |||||| | ||||||||||||| |||||||| ||||| ||||| ||||| || || || Sbjct 6147 TTACGGCGTGAAGTTATTCATCATTGACAGCCTAATGAAATGCGGCATTGGTGACGATGA 6088 Query 36039 TTACAACGGGCAAAAGGCGTTTGTTGACGCGCTGTGCGACTTCAAGAATAAAACCAACTC 36098 ||||||| ||| ||||| |||||||| || | || ||||||||||| ||| ||| Sbjct 6087 CTACAACGCGCAGAAGGCTTTTGTTGATGCTGTCTGTGACTTCAAGAACCGAACAAACAG 6028 Query 36099 TCACATTATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAA 36158 || | || ||||| |||||| | || || |||||||| ||||| ||||| ||||| Sbjct 6027 CCATGTAATACTCGTAACTCACAGTCGGAAAGGTGACAGCGAAGAGAAGCCTACTGGAAA 5968 Query 36159 GATGGACGTAAAAGGCTCAGGAGCGATTACAGACCTGACAGATAACCTATTTATCATCTG 36218 ||||||||| |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| Sbjct 5967 GATGGACGTGAAAGGCTCTGGTTCGATTACTGACCTTACAGACAACCTGTTTATCATCTG 5908 Query 36219 GCGCAATAAAGCTCGCGAGAGAGCGTTACAGCGCGTTCAGGCTGGCGAGCAAATTAACGA 36278 ||| || ||||| || |||| || ||||| | | || | | | ||| Sbjct 5907 GCGAAACAAAGCCCGTGAGAAGGCCATACAGAAGCAAAACCTTAATGAAGCATTGACCGA 5848 Query 36279 GAAAGACCAGCAACTTCTTGCTGCGCCCGCATCTGTTTTAATGCTTGAGAAGCAGCGAAA 36338 |||||||| | || || || ||||| | | ||||| ||||| ||||| || Sbjct 5847 CAAAGACCAATCAGCACTCAGCGCTCCTGCATCCATGCTCATGCTAGAGAAACAGCGCAA 5788 Query 36339 CGGGGAAGGGTGGGAAGGCGGTGTGCCGTTATTTCTTGACGAGCAGTCTCACCAGTTC 36396 |||||||||||||||||| || | ||| ||| || || || | || ||||| ||| Sbjct 5787 CGGGGAAGGGTGGGAAGGTGGCATACCGCTATACCTAGATGACCCATCGCACCAATTC 5730 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40588 ATCGCTGATATGCAGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAG 40647 ||| | || ||||||| || || || ||||| || | ||||||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 40648 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 40707 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 40708 AAGCG 40712 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137519371493868