Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq83 178 1e-39 seq122 149 7e-31 >seq83 Length=912621 Score = 178 bits (196), Expect = 1e-39 Identities = 295/421 (70%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737 ||| || || || || |||||||||||||| || ||||| | |||||| |||| || || Sbjct 580189 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 580130 Query 139738 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGA 139796 || || || | || ||| || ||||||| || || ||||| || |||||| | | Sbjct 580129 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 580071 Query 139797 GAGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAAT 139856 | ||||| || || || || | ||||||||| ||||| || || ||||||||||| || | Sbjct 580070 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 580011 Query 139857 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 139915 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 580010 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 579952 Query 139916 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 139975 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 579951 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 579892 Query 139976 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACAC 140035 || ||| | | || ||||||| | || || ||| ||||| | ||| || Sbjct 579891 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 579832 Query 140036 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATT 140095 || || |||||||| || || || || || || ||||| || || ||||||| || ||| Sbjct 579831 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 579772 Query 140096 T 140096 | Sbjct 579771 T 579771 >seq122 Length=4874392 Score = 149 bits (164), Expect = 7e-31 Identities = 314/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 139634 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 139693 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 139694 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 139753 || |||||||| || | |||||| | |||||| |||| || || |||||||| | | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 139754 ACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCCGCCCCGCCA 139813 || | ||| ||||| | || | |||||| |||||||| | || ||||| || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 139814 CGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAGAATGGGATA 139873 || | |||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 139874 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 139931 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 2806091 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 2806034 Query 139932 CAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 139991 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 2806033 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 2805974 Query 139992 CGTTGATGCCCTGCAATG-AGTCATCACTTTCGATCACCACACACGAACTAAATTGGCGT 140050 |||| ||| | ||| | ||| | | || |||| || || || || || ||||| Sbjct 2805973 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 140051 GTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094 || ||||| ||||| || | |||||| || || || || || || Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 2805871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 138767 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 138824 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 2807207 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 2807150 Query 138825 TGTTAGATACCTGAGAAGACGACTCACAAGGCATCAGCGCCGACAGTGTACTGTTACGAA 138884 ||| || | ||| ||||| | |||| | |||||||| || || || ||| ||| || | Sbjct 2807149 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 2807090 Query 138885 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 138926 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 2807089 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 2807048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 55869 TTCCGTAAAGGTGCGCGAAATAACGTCACGTTGTTGGTCTGGAGTCAGACTATTGAATCT 55928 ||| |||||||| |||| ||| |||||||| || || ||||| |||| | || || | Sbjct 3215646 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 3215705 Query 55929 TACGGCATATCCGCTAACGCGAATGGTTAGTTGCGGATACTTATCAGG 55976 |||||||| ||| |||||||||||| || |||||||| || || || Sbjct 3215706 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGG 3215753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532367918983440