Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq122 116 4e-21 >seq122 Length=4874392 Score = 116 bits (128), Expect = 4e-21 Identities = 277/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 142992 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACC 143051 |||||| | ||| | ||| | ||||||||||||||||| | ||||| | || || || Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 143052 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143111 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 143112 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 143171 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 143172 TTTCCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTC 143231 || |||| ||||| || || || ||||||| || || | || Sbjct 2806107 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 2806048 Query 143232 AGCACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 143291 ||||| || ||| ||||||| || ||||| ||||| | ||||| ||| | | || Sbjct 2806047 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 2805988 Query 143292 TGAGTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGCTTCAATAACAACACAAGA 143351 | | | | || |||||| || | || ||| || ||||| | || || || Sbjct 2805987 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 2805928 Query 143352 ACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCT 143410 || || || || || || || || | || | |||||| || || |||| ||||| || Sbjct 2805927 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548472258116280