Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_012749.1 Length=88487 Score E Sequences producing significant alignments: (Bits) Value seq122 107 1e-18 >seq122 Length=4874392 Score = 107 bits (118), Expect = 1e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 87394 AAGGTACTGGATGAGCACATTGGACTTATCTATGGCGACTCTATCACGTTGGAACGTGCA 87453 ||||| ||||| |||| | || || ||||| |||||||| || || | || ||||| Sbjct 3983501 AAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCC 3983442 Query 87454 AACGAAATCCTGAAGCGTCTGTATGAAATGGGGTTTGCAAGCTCTAACGTGGTGTTTGGT 87513 || | ||||||| |||||| | | | || ||||| ||| || |||||||| || Sbjct 3983441 AATCAGATCCTGAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGC 3983382 Query 87514 GTAGGCTCTTACACTTACCAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCA 87573 || || ||||| || |||||||||| || ||||||||||||| || || | ||||| Sbjct 3983381 GTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCG 3983322 Query 87574 AC 87575 || Sbjct 3983321 AC 3983320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 283011995956864